#!/usr/bin/env python """ Submit rabit jobs to Sun Grid Engine """ import argparse import sys import os import subprocess import rabit_tracker as tracker parser = argparse.ArgumentParser(description='Rabit script to submit rabit job using MPI') parser.add_argument('-n', '--nworker', required=True, type=int, help = 'number of worker proccess to be launched') parser.add_argument('-q', '--queue', default='default', type=str, help = 'the queue we want to submit the job to') parser.add_argument('-hip', '--host_ip', default='auto', type=str, help = 'host IP address if cannot be automatically guessed, specify the IP of submission machine') parser.add_argument('--vcores', default = 1, type=int, help = 'number of vcpores to request in each mapper, set it if each rabit job is multi-threaded') parser.add_argument('--jobname', default='auto', help = 'customize jobname in tracker') parser.add_argument('--logdir', default='auto', help = 'customize the directory to place the logs') parser.add_argument('-v', '--verbose', default=0, choices=[0, 1], type=int, help = 'print more messages into the console') parser.add_argument('command', nargs='+', help = 'command for rabit program') args = parser.parse_args() if args.jobname == 'auto': args.jobname = ('rabit%d.' % args.nworker) + args.command[0].split('/')[-1]; if args.logdir == 'auto': args.logdir = args.jobname + '.log' if os.path.exists(args.logdir): if not os.path.isdir(args.logdir): raise RuntimeError('specified logdir %s is a file instead of directory' % args.logdir) else: os.mkdir(args.logdir) runscript = '%s/runrabit.sh' % args.logdir fo = open(runscript, 'w') fo.write('source ~/.bashrc\n') fo.write('\"$@\"\n') fo.close() # # submission script using MPI # def sge_submit(nslave, worker_args, worker_envs): """ customized submit script, that submit nslave jobs, each must contain args as parameter note this can be a lambda function containing additional parameters in input Parameters nslave number of slave process to start up args arguments to launch each job this usually includes the parameters of master_uri and parameters passed into submit """ env_arg = ','.join(['%s=\"%s\"' % (k, str(v)) for k, v in worker_envs.items()]) cmd = 'qsub -cwd -t 1-%d -S /bin/bash' % nslave if args.queue != 'default': cmd += '-q %s' % args.queue cmd += ' -N %s ' % args.jobname cmd += ' -e %s -o %s' % (args.logdir, args.logdir) cmd += ' -pe orte %d' % (args.vcores) cmd += ' -v %s,PATH=${PATH}:.' % env_arg cmd += ' %s %s' % (runscript, ' '.join(args.command + worker_args)) print cmd subprocess.check_call(cmd, shell = True) print 'Waiting for the jobs to get up...' # call submit, with nslave, the commands to run each job and submit function tracker.submit(args.nworker, [], fun_submit = sge_submit, verbose = args.verbose)