51 Commits

Author SHA1 Message Date
Philip Hyunsu Cho
ef26bc45bf
Hide C++ symbols in libxgboost.so when building Python wheel (#5590)
* Hide C++ symbols in libxgboost.so when building Python wheel

* Update Jenkinsfile

* Add test

* Upgrade rabit

* Add setup.py option.

Co-authored-by: fis <jm.yuan@outlook.com>
2020-04-24 13:32:05 -07:00
Philip Hyunsu Cho
92913aaf7f
[CI] Use Vault repository to re-gain access to devtoolset-4 (#5589)
* [CI] Use Vault repository to re-gain access to devtoolset-4

* Use manylinux2010 tag

* Update Dockerfile.jvm

* Fix rename_whl.py

* Upgrade Pip, to handle manylinux2010 tag

* Update insert_vcomp140.py

* Update test_python.sh
2020-04-23 18:53:54 -07:00
Jiaming Yuan
ccd30e4491
Fix non-openmp build. (#5566)
* Add test to Jenkins.
* Fix threading utils tests.
* Require thread library.
2020-04-20 12:16:38 +08:00
Jiaming Yuan
468b1594d3
Fix CLI model IO. (#5535)
* Add test for comparing Python and CLI training result.
2020-04-16 07:48:47 +08:00
Jiaming Yuan
8b04736b81
[dask] dask cudf inplace prediction. (#5512)
* Add inplace prediction for dask-cudf.

* Remove Dockerfile.release, since it's not used anywhere

* Use Conda exclusively in CUDF and GPU containers

* Improve cupy memory copying.

* Add skip marks to tests.

* Add mgpu-cudf category on the CI to run all distributed tests.

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
2020-04-15 18:15:51 +08:00
Philip Hyunsu Cho
1b1969f20d
[jvm-packages] [CI] Create a Maven repository to host SNAPSHOT JARs (#5533) 2020-04-14 19:33:32 -07:00
Philip Hyunsu Cho
88b64c8162
Ensure that configured dmlc/build_config.h is picked up by Rabit and XGBoost (#5514)
* Ensure that configured header (build_config.h) from dmlc-core is picked up by Rabit and XGBoost

* Check which Rabit target is being used

* Use CMake 3.13 in all Jenkins tests

* Upgrade CMake in Travis CI

* Install CMake using Kitware installer

* Remove existing CMake (3.12.4)
2020-04-11 23:48:28 -07:00
Jiaming Yuan
0012f2ef93
Upgrade clang-tidy on CI. (#5469)
* Correct all clang-tidy errors.
* Upgrade clang-tidy to 10 on CI.

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
2020-04-05 04:42:29 +08:00
Jiaming Yuan
2ba8c13b69
Revert "Enable rabit test (#5358)" (#5377)
This reverts commit 9a5efffebe9e527ca4dc27c281b06c221596f860.
2020-02-29 04:25:03 +08:00
Chen Qin
9a5efffebe
Enable rabit test (#5358) 2020-02-28 22:29:02 +08:00
Philip Hyunsu Cho
7ac7e8778f
Port patches from 1.0.0 branch (#5336)
* Remove f-string, since it's not supported by Python 3.5 (#5330)

* Remove f-string, since it's not supported by Python 3.5

* Add Python 3.5 to CI, to ensure compatibility

* Remove duplicated matplotlib

* Show deprecation notice for Python 3.5

* Fix lint

* Fix lint

* Fix a unit test that mistook MINOR ver for PATCH ver

* Enforce only major version in JSON model schema

* Bump version to 1.1.0-SNAPSHOT
2020-02-21 13:13:21 -08:00
Philip Hyunsu Cho
2a071cebc5 Add CMake option to run Undefined Behavior Sanitizer (UBSan) (#5211)
* Fix related errors.
2020-01-20 16:57:44 +08:00
Jiaming Yuan
7663de956c
Run training with empty DMatrix. (#4990)
This makes GPU Hist robust in distributed environment as some workers might not
be associated with any data in either training or evaluation.

* Disable rabit mock test for now: See #5012 .

* Disable dask-cudf test at prediction for now: See #5003

* Launch dask job for all workers despite they might not have any data.
* Check 0 rows in elementwise evaluation metrics.

   Using AUC and AUC-PR still throws an error.  See #4663 for a robust fix.

* Add tests for edge cases.
* Add `LaunchKernel` wrapper handling zero sized grid.
* Move some parts of allreducer into a cu file.
* Don't validate feature names when the booster is empty.

* Sync number of columns in DMatrix.

  As num_feature is required to be the same across all workers in data split
  mode.

* Filtering in dask interface now by default syncs all booster that's not
empty, instead of using rank 0.

* Fix Jenkins' GPU tests.

* Install dask-cuda from source in Jenkins' test.

  Now all tests are actually running.

* Restore GPU Hist tree synchronization test.

* Check UUID of running devices.

  The check is only performed on CUDA version >= 10.x, as 9.x doesn't have UUID field.

* Fix CMake policy and project variables.

  Use xgboost_SOURCE_DIR uniformly, add policy for CMake >= 3.13.

* Fix copying data to CPU

* Fix race condition in cpu predictor.

* Fix duplicated DMatrix construction.

* Don't download extra nccl in CI script.
2019-11-06 16:13:13 +08:00
Philip Hyunsu Cho
96cd7ec2bb
[CI] Upload master branch artifacts to S3 root [skip ci] (#4979) 2019-10-23 22:39:04 -07:00
Philip Hyunsu Cho
da6e74f7bb
[CI] Upload nightly builds to S3 (#4976)
* Do not store built artifacts in the Jenkins master

* Add wheel renaming script

* Upload wheels to S3 bucket

* Use env.GIT_COMMIT

* Capture git hash correctly

* Add missing import in Jenkinsfile

* Address reviewer's comments

* Put artifacts for pull requests in separate directory

* No wildcard expansion in Windows CMD
2019-10-23 21:16:05 -07:00
Philip Hyunsu Cho
f7487e4c2a [CI] Run cuDF tests in Jenkins CI server (#4927) 2019-10-13 00:04:54 -04:00
Philip Hyunsu Cho
5b4f28cc46 [CI] Raise timeout threshold in Jenkins (#4938) 2019-10-12 23:47:35 -04:00
Oleksandr Pryimak
80977182c5 Use bundled gtest (#4900)
* Suggest to use gtest bundled with dmlc

* Use dmlc bundled gtest in all CI scripts

* Make clang-tidy to use dmlc embedded gtest
2019-10-09 16:26:19 -07:00
Chen Qin
512f037e55 [rabit_bootstrap_cache ] failed xgb worker recover from other workers (#4808)
* Better recovery support.  Restarting only the failed workers.
2019-09-16 23:31:52 -04:00
Rong Ou
6edddd7966 Refactor DMatrix to return batches of different page types (#4686)
* Use explicit template parameter for specifying page type.
2019-08-03 15:10:34 -04:00
Philip Hyunsu Cho
0c50f8417a
[CI] Specify account ID when logging into ECR Docker registry (#4584)
* [CI] Specify account ID when logging into ECR Docker registry

* Do not display awscli login command
2019-06-19 15:08:42 -07:00
Philip Hyunsu Cho
570374effe
[CI] Remove CUDA 8.0 from CI pipeline (#4580) 2019-06-18 23:38:03 -07:00
Bryan Woods
278562db13 Add support for cross-validation using query ID (#4474)
* adding support for matrix slicing with query ID for cross-validation

* hail mary test of unrar installation for windows tests

* trying to modify tests to run in Github CI

* Remove dependency on wget and unrar

* Save error log from R test

* Relax assertion in test_training

* Use int instead of bool in C function interface

* Revise R interface

* Add XGDMatrixSliceDMatrixEx and keep old XGDMatrixSliceDMatrix for API compatibility
2019-05-23 10:45:02 -07:00
Philip Hyunsu Cho
515f5f5c47
[RFC] Version 0.90 release candidate (#4475)
* Release 0.90

* Add script to automatically generate acknowledgment

* Update NEWS.md
2019-05-20 01:02:44 -07:00
Rong Ou
df2cdaca50 add cuda 10.1 support (#4468) 2019-05-14 18:30:58 +00:00
Philip Hyunsu Cho
c6f2a7e186
[CI] Add Windows GPU to Jenkins CI pipeline (#4463)
* Fix #4462: Use /MT flag consistently for MSVC target

* First attempt at Windows CI

* Distinguish stages in Linux and Windows pipelines

* Try running CMake in Windows pipeline

* Add build step
2019-05-14 04:45:06 +00:00
Philip Hyunsu Cho
e7d17ec4f4
[CI] Build XGBoost wheels with CUDA 9.0 (#4459)
* [CI] Build XGBoost wheels with CUDA 9.0

* Do not call archiveArtifacts for 8.0 wheel
2019-05-11 16:35:02 -07:00
Philip Hyunsu Cho
6ff994126a [BLOCKING][CI] Upgrade to Spark 2.4.3 (#4414)
* [CI] Upgrade to Spark 2.4.2

* Pass Spark version to build script

* Allow multiple --build-arg in ci_build.sh

* Fix syntax

* Fix container name

* Update pom.xml

* Fix container name

* Update Jenkinsfile

* Update pom.xml

* Update Dockerfile.jvm_cross
2019-05-09 21:36:59 -07:00
Philip Hyunsu Cho
bfddc2c42c Make CMakeLists.txt compatible with CMake 3.3 (#4420)
* Make CMakeLists.txt compatible with CMake 3.3; require CMake 3.11 for MSVC

* Use CMake 3.12 when sanitizer is enabled

* Disable funroll-loops for MSVC

* Use cmake version in container name

* Add missing arg

* Fix egrep use in ci_build.sh

* Display CMake version

* Do not set OpenMP_CXX_LIBRARIES for MSVC

* Use cmake_minimum_required()
2019-05-02 11:49:32 +08:00
Philip Hyunsu Cho
ea850ecd20
[CI] Refactor Jenkins CI pipeline + migrate all Linux tests to Jenkins (#4401)
* All Linux tests are now in Jenkins CI
* Tests are now de-coupled from builds. We can now build XGBoost with one version of CUDA/JDK and test it with another version of CUDA/JDK
* Builds (compilation) are significantly faster because 1) They use C5 instances with faster CPU cores; and 2) build environment setup is cached using Docker containers
2019-04-26 18:39:12 -07:00
Philip Hyunsu Cho
37c75aac41
[CI] Add external Docker build cache (#4331) 2019-04-04 13:36:39 -07:00
Rong Ou
5aa42b5f11 jenkins build for cuda 10.0 (#4281)
* jenkins build for cuda 10.0

* yum install nccl2 for cuda 10.0
2019-03-22 22:35:18 -07:00
Philip Hyunsu Cho
20845e8ccf
Broken link for NCCL: cannot use CUDA 10.1 (#4232) 2019-03-08 09:10:29 -08:00
Rong Ou
9837b09b20 support cuda 10.1 (#4223)
* support cuda 10.1

* add cuda 10.1 to jenkins build matrix
2019-03-08 12:22:12 +13:00
Jiaming Yuan
8905df4a18
Perform clang-tidy on both cpp and cuda source. (#4034)
* Basic script for using compilation database.

* Add `GENERATE_COMPILATION_DATABASE' to CMake.
* Rearrange CMakeLists.txt.
* Add basic python clang-tidy script.
* Remove modernize-use-auto.
* Add clang-tidy to Jenkins
* Refine logic for correct path detection

In Jenkins, the project root is of form /home/ubuntu/workspace/xgboost_PR-XXXX

* Run clang-tidy in CUDA 9.2 container
* Use clang_tidy container
2019-02-05 16:07:43 +08:00
Philip Hyunsu Cho
c5f92df475
Disable retries in Jenkins CI, since we're now using On-Demand instances instead of Spot (#3948) 2018-11-28 14:57:09 -08:00
Jiaming Yuan
2ea0f887c1
Refactor Python tests. (#3897)
* Deprecate nose tests.
* Format python tests.
2018-11-15 13:56:33 +13:00
Philip Hyunsu Cho
411df9f878
Test wheels on CUDA 10.0 container for compatibility (#3838) 2018-11-01 08:34:47 -07:00
Philip Hyunsu Cho
6d42e56c85
Retry Jenkins CI tests up to 3 times to improve reliability (redux) (#3775) 2018-10-08 11:24:01 -07:00
Philip Hyunsu Cho
7a7269e983
Retry Jenkins CI tests up to 3 times to improve reliability (#3769) 2018-10-08 09:55:39 -07:00
Philip Hyunsu Cho
ae7e58b96e
Test wheel compatibility on CPU containers, for all pull requests (#3762)
* Test wheel compatibility on CPU containers, for all pull requests

* Run wheel test only when multi-GPU flag is not set
2018-10-06 20:18:58 -07:00
Philip Hyunsu Cho
b50bc2c1d4
Add multi-GPU unit test environment (#3741)
* Add multi-GPU unit test environment

* Better assertion message

* Temporarily disable failing test

* Distinguish between multi-GPU and single-GPU CPP tests

* Consolidate Python tests. Use attributes to distinguish multi-GPU Python tests from single-CPU counterparts
2018-09-29 11:20:58 -07:00
Philip Hyunsu Cho
baef5741df
Separate out restricted and unrestricted tasks (#3736) 2018-09-27 23:06:14 -07:00
Philip Hyunsu Cho
aa4ee6a0e4
[BLOCKING] Adding JVM doc build to Jenkins CI (#3567)
* Adding Java/Scala doc build to Jenkins CI

* Deploy built doc to S3 bucket

* Build doc only for branches

* Build doc first, to get doc faster for branch updates

* Have ReadTheDocs download doc tarball from S3

* Update JVM doc links

* Put doc build commands in a script

* Specify Spark 2.3+ requirement for XGBoost4J-Spark

* Build GPU wheel without NCCL, to reduce binary size
2018-08-09 13:27:01 -07:00
Thejaswi
a6331925d2 Upgrade cuda version to 9.2 for CI workflows (#3460)
- Needed by the issue #3404
 - as v9.1 doesn't have a nccl2 release
2018-07-08 23:04:51 -07:00
Rory Mitchell
24fde92660 Build universal wheels using GPU CI (#3424) 2018-06-29 13:45:24 +00:00
Rory Mitchell
3f7696ff53
Cleanup old artefacts in Jenkins (#3361) 2018-06-05 15:16:37 +12:00
Rory Mitchell
f8b7686719
Add cuda 8/9.1 centos 6 builds, test GPU wheel on CPU only container. (#3309)
* Add cuda 8/9.1 centos 6 builds, test GPU wheel on CPU only container.

* Add Google test
2018-05-17 10:57:01 +12:00
Rory Mitchell
90a5c4db9d
Update Jenkins CI for GPU (#3294) 2018-05-04 16:50:59 +12:00
Michal Malohlava
33ee7d1615 [BUILD] Dockerfile and Jenkinsfile revisited (#2514)
Includes:
  - Dockerfile changes
    - Dockerfile clean up
    - Fix execution privileges of files used from Dockerfile.
    - New Dockerfile entrypoint to replace with_user script
    - Defined a placeholders for CPU testing (script and Dockerfile)
  - Jenkinsfile
    - Jenkins file milestone defined
    - Single source code checkout and propagation via stash/unstash
    - Bash needs to be explicitly used in launching make build, since we need
access to environment
    - Jenkinsfile build factory for cmake and make style of jobs
    - Archivation of artifacts (*.so, *.whl, *.egg) produced by cmake build

Missing:
  - CPU testing
  - Python3 env build and testing
2017-07-13 17:51:47 +12:00