90 Commits

Author SHA1 Message Date
Jiaming Yuan
1369133916
[dask] Remove the workaround for segfault. (#7146) 2021-07-30 03:57:53 +08:00
Gil Forsyth
92ae3abc97
[dask] Disallow importing non-dask estimators from xgboost.dask (#7133)
* Disallow importing non-dask estimators from xgboost.dask

This is mostly a style change, but also avoids a user error (that I have
committed on a few occasions).  Since `XGBRegressor` and `XGBClassifier`
are imported as parent classes for the `dask` estimators, without
defining an `__all__`, autocomplete (or muscle) memory will produce the
following with little prompting:

```
from xgboost.dask import XGBClassifier
```

There's nothing inherently wrong with that, but given that
`XGBClassifier` is not `dask` enabled, it can lead to confusing behavior
until you figure out you should've typed

```
from xgboost.dask import DaskXGBClassifier
```

Another option is to alias import the existing non-dask estimators.

* Remove base/iter class, add train predict funcs
2021-07-28 02:07:23 +08:00
Jiaming Yuan
7017dd5a26
[JVM-Packages] Use Python tracker in XGBoost for JVM package. (#7132) 2021-07-27 16:20:42 +08:00
Jiaming Yuan
2f524e9f41
[dask] Work around segfault in prediction. (#7112) 2021-07-16 04:27:05 +08:00
Jiaming Yuan
86715e4cd4
Support categorical data for dask functional interface and DQM. (#7043)
* Support categorical data for dask functional interface and DQM.

* Implement categorical data support for GPU GK-merge.
* Add support for dask functional interface.
* Add support for DQM.

* Get newer cupy.
2021-06-18 13:06:52 +08:00
Jiaming Yuan
c4b9f4f622
Add enable_categorical to sklearn. (#7011) 2021-06-04 02:29:14 +08:00
Jiaming Yuan
89a49cf30e
Fix dask predict on DaskDMatrix with iteration_range. (#7005) 2021-05-29 04:43:12 +08:00
Jiaming Yuan
7e846bb965
Fix prediction on df with latest dask. (#6969) 2021-05-19 12:23:03 +08:00
Jiaming Yuan
05ac415780
[dask] Set dataframe index in predict. (#6944) 2021-05-12 13:24:21 +08:00
Jiaming Yuan
dee5ef2dfd
Typehint for Sklearn. (#6799) 2021-04-14 06:55:21 +08:00
Jiaming Yuan
47b62480af
More general predict proba. (#6817)
* Use `output_margin` for `softmax`.
* Add test for dask binary cls.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2021-04-01 19:52:12 +08:00
James Lamb
f01af43eb0
[dask] disable work stealing explicitly for training tasks (#6794) 2021-03-29 16:47:56 +08:00
Jiaming Yuan
325bc93e16
[dask] Use distributed.MultiLock (#6743)
* [dask] Use `distributed.MultiLock`

This enables training multiple models in parallel.

* Conditionally import `MultiLock`.
* Use async train directly in scikit learn interface.
* Use `worker_client` when available.
2021-03-16 14:19:41 +08:00
capybara
b6167cd2ff
[dask] Use client to persist collections (#6722)
Co-authored-by: fis <jm.yuan@outlook.com>
2021-02-25 16:40:38 +08:00
Jiaming Yuan
c375173dca
Support pylint 2.7.0 (#6726) 2021-02-25 12:49:58 +08:00
James Lamb
dc97b5f19f
[dask] remove outdated comment (#6699) 2021-02-15 18:49:11 +08:00
Jiaming Yuan
e8c5c53e2f
Use Predictor for dart. (#6693)
* Use normal predictor for dart booster.
* Implement `inplace_predict` for dart.
* Enable `dart` for dask interface now that it's thread-safe.
* categorical data should be working out of box for dart now.

The implementation is not very efficient as it has to pull back the data and
apply weight for each tree, but still a significant improvement over previous
implementation as now we no longer binary search for each sample.

* Fix output prediction shape on dataframe.
2021-02-09 23:30:19 +08:00
Jiaming Yuan
1335db6113
[dask] Improve documents. (#6687)
* Add tag for versions.
* use autoclass in sphinx build.
Made some class methods to be private to avoid exporting documents.
2021-02-09 09:20:58 +08:00
Jiaming Yuan
4656b09d5d
[breaking] Add prediction fucntion for DMatrix and use inplace predict for dask. (#6668)
* Add a new API function for predicting on `DMatrix`.  This function aligns
with rest of the `XGBoosterPredictFrom*` functions on semantic of function
arguments.
* Purge `ntree_limit` from libxgboost, use iteration instead.
* [dask] Use `inplace_predict` by default for dask sklearn models.
* [dask] Run prediction shape inference on worker instead of client.

The breaking change is in the Python sklearn `apply` function, I made it to be
consistent with other prediction functions where `best_iteration` is used by
default.
2021-02-08 18:26:32 +08:00
Jiaming Yuan
72892cc80d
[dask] Disable gblinear and dart. (#6665) 2021-02-04 09:13:09 +08:00
Jiaming Yuan
9d62b14591
Fix document. [skip ci] (#6669) 2021-02-02 20:43:31 +08:00
Jiaming Yuan
411592a347
Enhance inplace prediction. (#6653)
* Accept array interface for csr and array.
* Accept an optional proxy dmatrix for metainfo.

This constructs an explicit `_ProxyDMatrix` type in Python.

* Remove unused doc.
* Add strict output.
2021-02-02 11:41:46 +08:00
Jiaming Yuan
87ab1ad607
[dask] Accept Future of model for prediction. (#6650)
This PR changes predict and inplace_predict to accept a Future of model, to avoid sending models to workers repeatably.

* Document is updated to reflect functionality additions in recent changes.
2021-02-02 08:45:52 +08:00
Jiaming Yuan
d8ec7aad5a
[dask] Add a 1 line sample to infer output shape. (#6645)
* [dask] Use a 1 line sample to infer output shape.

This is for inferring shape with direct prediction (without DaskDMatrix).
There are a few things that requires known output shape before carrying out
actual prediction, including dask meta data, output dataframe columns.

* Infer output shape based on local prediction.
* Remove set param in predict function as it's not thread safe nor necessary as
we now let dask to decide the parallelism.
* Simplify prediction on `DaskDMatrix`.
2021-01-30 18:55:50 +08:00
Jiaming Yuan
d167892c7e
[dask] Ensure model can be pickled. (#6651) 2021-01-28 21:47:57 +08:00
Jiaming Yuan
740d042255
Add base_margin for evaluation dataset. (#6591)
* Add base margin to evaluation datasets.
* Unify the code base for evaluation matrices.
2021-01-26 02:11:02 +08:00
Jiaming Yuan
4bf23c2391
Specify shape in prediction contrib and interaction. (#6614) 2021-01-26 02:08:22 +08:00
Jiaming Yuan
8942c98054
Define metainfo and other parameters for all DMatrix interfaces. (#6601)
This PR ensures all DMatrix types have a common interface.

* Fix logic in avoiding duplicated DMatrix in sklearn.
* Check for consistency between DMatrix types.
* Add doc for bounds.
2021-01-25 16:06:06 +08:00
Jiaming Yuan
89a00a5866
[dask] Random forest estimators (#6602) 2021-01-13 20:59:20 +08:00
Jiaming Yuan
80065d571e
[dask] Add DaskXGBRanker (#6576)
* Initial support for distributed LTR using dask.

* Support `qid` in libxgboost.
* Refactor `predict` and `n_features_in_`, `best_[score/iteration/ntree_limit]`
  to avoid duplicated code.
* Define `DaskXGBRanker`.

The dask ranker doesn't support group structure, instead it uses query id and
convert to group ptr internally.
2021-01-08 18:35:09 +08:00
Jiaming Yuan
60cfd14349
[dask, sklearn] Fix predict proba. (#6566)
* For sklearn:
  - Handles user defined objective function.
  - Handles `softmax`.

* For dask:
  - Use the implementation from sklearn, the previous implementation doesn't perform any extra handling.
2021-01-05 08:29:06 +08:00
Jiaming Yuan
de8fd852a5
[dask] Add type hints. (#6519)
* Add validate_features.
* Show type hints in doc.

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
2020-12-29 19:41:02 +08:00
Jiaming Yuan
610ee632cc
[Breaking] Rename data to X in predict_proba. (#6555)
New Scikit-Learn version uses keyword argument, and `X` is the predefined
keyword.

* Use pip to install latest Python graphviz on Windows CI.
2020-12-28 21:36:03 +08:00
Philip Hyunsu Cho
125b3c0f2d
Lazy import cuDF and Dask (#6522)
* Lazy import cuDF

* Lazy import Dask

Co-authored-by: PSEUDOTENSOR / Jonathan McKinney <pseudotensor@gmail.com>

* Fix lint

Co-authored-by: PSEUDOTENSOR / Jonathan McKinney <pseudotensor@gmail.com>
2020-12-17 01:51:35 -08:00
Jiaming Yuan
d45c0d843b
Show partition status in dask error. (#6366) 2020-12-16 02:58:21 +08:00
Jiaming Yuan
a30461cf87
[dask] Support all parameters in regressor and classifier. (#6471)
* Add eval_metric.
* Add callback.
* Add feature weights.
* Add custom objective.
2020-12-14 07:35:56 +08:00
Jiaming Yuan
0ffaf0f5be
Fix dask ip resolution. (#6475)
This adopts the solution used in dask/dask-xgboost#40 which employs the get_host_ip from dmlc-core tracker.
2020-12-07 16:36:23 -08:00
Jiaming Yuan
47b86180f6
Don't validate feature when number of rows is 0. (#6472) 2020-12-07 18:08:51 +08:00
Jiaming Yuan
703c2d06aa
Fix global config default value. (#6470) 2020-12-06 06:15:33 +08:00
Philip Hyunsu Cho
fb56da5e8b
Add global configuration (#6414)
* Add management functions for global configuration: XGBSetGlobalConfig(), XGBGetGlobalConfig().
* Add Python interface: set_config(), get_config(), and config_context().
* Add unit tests for Python
* Add R interface: xgb.set.config(), xgb.get.config()
* Add unit tests for R

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2020-12-03 00:05:18 -08:00
Jiaming Yuan
a7b42adb74
Fix dask predict (#6412) 2020-11-20 10:10:52 +08:00
Jiaming Yuan
fcd6fad822
[dask] Small cleanup. (#6391) 2020-11-14 22:15:05 +08:00
Jiaming Yuan
4ccf92ea34
[dask] Fix union of workers. (#6375) 2020-11-13 16:55:05 +08:00
Jiaming Yuan
fcfeb4959c
Deprecate positional arguments. (#6365)
Deprecate positional arguments in following functions:

- `__init__` for all classes in sklearn module.
- `fit` method for all classes in sklearn module.
- dask interface.
- `set_info` for `DMatrix` class.

Refactor the evaluation matrices handling.
2020-11-13 11:10:30 +08:00
Jiaming Yuan
6e12c2a6f8
[dask] Supoort running on GKE. (#6343)
* Avoid accessing `scheduler_info()['workers']`.
* Avoid calling `client.gather` inside task.
* Avoid using `client.scheduler_address`.
2020-11-11 18:04:34 +08:00
Rory Mitchell
29745c6df2
Fix inclusive scan for large sizes (#6234) 2020-11-03 17:01:43 +13:00
Jiaming Yuan
7756192906
[dask] Fix prediction on DaskDMatrix with multiple meta data. (#6333)
* Unify the meta handling methods.
2020-11-02 19:18:44 -05:00
Jiaming Yuan
74ea82209b
Lazy import dask libraries. (#6309)
* Lazy import dask libraries.

* Lint && fix.

* Use short name.
2020-10-28 15:50:11 -07:00
Jiaming Yuan
3da5a69dc9
Fix typo in dask interface. (#6240) 2020-10-15 15:26:29 +08:00
Jiaming Yuan
bed7ae4083
Loop over thrust::reduce. (#6229)
* Check input chunk size of dqdm.
* Add doc for current limitation.
2020-10-14 10:40:56 +13:00