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Author SHA1 Message Date
amdsc21
f0b8c02f15 merge latest changes 2023-03-10 22:10:20 +01:00
dependabot[bot]
85c3334c2b
Bump hadoop-common from 3.2.4 to 3.3.4 in /jvm-packages (#8882) 
Bumps hadoop-common from 3.2.4 to 3.3.4.

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 2023-03-08 13:15:39 +08:00
amdsc21
ed45aa2816 Merge branch 'master' into dev-hui 2023-03-08 00:39:33 +01:00
dependabot[bot]
f53055f75e
Bump maven-assembly-plugin from 3.4.2 to 3.5.0 in /jvm-packages (#8837) 
Bumps [maven-assembly-plugin](https://github.com/apache/maven-assembly-plugin) from 3.4.2 to 3.5.0.
- [Release notes](https://github.com/apache/maven-assembly-plugin/releases)
- [Commits](https://github.com/apache/maven-assembly-plugin/compare/maven-assembly-plugin-3.4.2...maven-assembly-plugin-3.5.0)

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 2023-03-08 02:20:40 +08:00
dependabot[bot]
0f6c502d36
Bump scala-maven-plugin in /jvm-packages/xgboost4j-spark (#8873) 
Bumps scala-maven-plugin from 4.8.0 to 4.8.1.

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 2023-03-07 19:31:23 +08:00
amdsc21
c51a1c9aae rename hip.cc to hip 2023-03-07 05:39:53 +01:00
amdsc21
6039a71e6c add hip structure 2023-03-07 02:17:19 +01:00
dependabot[bot]
d62daa0b32
Bump maven-javadoc-plugin from 3.4.1 to 3.5.0 in /jvm-packages (#8814) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 3.4.1 to 3.5.0.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-3.4.1...maven-javadoc-plugin-3.5.0)

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 2023-02-16 23:16:11 +08:00
Jiaming Yuan
c1786849e3
Use array interface for CSC matrix. (#8672) 
* Use array interface for CSC matrix.

Use array interface for CSC matrix and align the interface with CSR and dense.

- Fix nthread issue in the R package DMatrix.
- Unify the behavior of handling `missing` with other inputs.
- Unify the behavior of handling `missing` around R, Python, Java, and Scala DMatrix.
- Expose `num_non_missing` to the JVM interface.
- Deprecate old CSR and CSC constructors.
 2023-02-05 01:59:46 +08:00
dependabot[bot]
a9c6199723
Bump maven-project-info-reports-plugin in /jvm-packages (#8662) 
Bumps [maven-project-info-reports-plugin](https://github.com/apache/maven-project-info-reports-plugin) from 3.4.1 to 3.4.2.
- [Release notes](https://github.com/apache/maven-project-info-reports-plugin/releases)
- [Commits](https://github.com/apache/maven-project-info-reports-plugin/compare/maven-project-info-reports-plugin-3.4.1...maven-project-info-reports-plugin-3.4.2)

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 2023-01-16 04:57:28 +08:00
dependabot[bot]
37d4482e3e
Bump maven-checkstyle-plugin from 3.2.0 to 3.2.1 in /jvm-packages (#8661) 
Bumps [maven-checkstyle-plugin](https://github.com/apache/maven-checkstyle-plugin) from 3.2.0 to 3.2.1.
- [Release notes](https://github.com/apache/maven-checkstyle-plugin/releases)
- [Commits](https://github.com/apache/maven-checkstyle-plugin/compare/maven-checkstyle-plugin-3.2.0...maven-checkstyle-plugin-3.2.1)

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 2023-01-16 02:02:03 +08:00
Jiaming Yuan
badeff1d74
Init estimation for regression. (#8272) 2023-01-11 02:04:56 +08:00
Bobby Wang
4e12f3e1bc
[Breaking][jvm-packages] Bump rapids version to 22.12.0 (#8648) 
* [jvm-packages] Bump rapids version to 22.12.0

This PR bumps spark version to 3.1.1 and the rapids version
to 22.12.0, which results in the latest xgboost can't run
with the old rapids packages.
 2023-01-07 18:59:17 +08:00
Jiaming Yuan
6eaddaa9c3
[CI] Fix CI with updated dependencies. (#8631) 
* [CI] Fix CI with updated dependencies.

- Fix jvm package get iris.

* Skip SHAP test for now.

* Revert "Skip SHAP test for now."

This reverts commit 9aa28b4d8aee53fa95d92d2a879c6783ff4b2faa.

* Catch all exceptions.
 2023-01-03 21:04:04 -08:00
dependabot[bot]
20e6087579
Bump kryo from 5.3.0 to 5.4.0 in /jvm-packages (#8629) 
Bumps [kryo](https://github.com/EsotericSoftware/kryo) from 5.3.0 to 5.4.0.
- [Release notes](https://github.com/EsotericSoftware/kryo/releases)
- [Commits](https://github.com/EsotericSoftware/kryo/compare/kryo-parent-5.3.0...kryo-parent-5.4.0)

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 2023-01-03 18:44:39 +08:00
dependabot[bot]
0c38ca7f6e
Bump nexus-staging-maven-plugin from 1.6.7 to 1.6.13 in /jvm-packages (#8600) 2022-12-15 08:44:05 +00:00
dependabot[bot]
eac980fbfc
Bump maven-checkstyle-plugin from 3.1.2 to 3.2.0 in /jvm-packages (#8594) 
Bumps [maven-checkstyle-plugin](https://github.com/apache/maven-checkstyle-plugin) from 3.1.2 to 3.2.0.
- [Release notes](https://github.com/apache/maven-checkstyle-plugin/releases)
- [Commits](https://github.com/apache/maven-checkstyle-plugin/compare/maven-checkstyle-plugin-3.1.2...maven-checkstyle-plugin-3.2.0)

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 2022-12-14 19:46:03 +08:00
dependabot[bot]
f64871c74a
Bump spark.version from 3.0.1 to 3.0.3 in /jvm-packages (#8593) 
Bumps `spark.version` from 3.0.1 to 3.0.3.

Updates `spark-mllib_2.12` from 3.0.1 to 3.0.3

Updates `spark-core_2.12` from 3.0.1 to 3.0.3

Updates `spark-sql_2.12` from 3.0.1 to 3.0.3

---
updated-dependencies:
- dependency-name: org.apache.spark:spark-mllib_2.12
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  update-type: version-update:semver-patch
- dependency-name: org.apache.spark:spark-core_2.12
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 2022-12-14 17:23:48 +08:00
dependabot[bot]
5aeb8f7009
Bump maven-gpg-plugin from 1.5 to 3.0.1 in /jvm-packages (#8571) 2022-12-08 06:59:11 +00:00
dependabot[bot]
f592a5125b
Bump flink.version from 1.7.2 to 1.8.3 in /jvm-packages (#8561) 2022-12-07 20:53:22 +00:00
dependabot[bot]
27aea6c7b5
Bump maven-surefire-plugin from 2.19.1 to 2.22.2 in /jvm-packages (#8562) 2022-12-07 17:56:05 +00:00
dependabot[bot]
4f1e453ff5
Bump maven-project-info-reports-plugin in /jvm-packages (#8560) 
Bumps [maven-project-info-reports-plugin](https://github.com/apache/maven-project-info-reports-plugin) from 2.2 to 3.4.1.
- [Release notes](https://github.com/apache/maven-project-info-reports-plugin/releases)
- [Commits](https://github.com/apache/maven-project-info-reports-plugin/compare/maven-project-info-reports-plugin-2.2...maven-project-info-reports-plugin-3.4.1)

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 2022-12-07 14:33:29 +08:00
dependabot[bot]
7774bf628e
Bump scalatest-maven-plugin from 1.0 to 2.2.0 in /jvm-packages (#8509) 
Bumps [scalatest-maven-plugin](https://github.com/scalatest/scalatest-maven-plugin) from 1.0 to 2.2.0.
- [Release notes](https://github.com/scalatest/scalatest-maven-plugin/releases)
- [Commits](https://github.com/scalatest/scalatest-maven-plugin/commits/release-2.2.0)

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 2022-12-06 21:34:22 +08:00
dependabot[bot]
4a99c9bdb8
Bump commons-lang3 from 3.9 to 3.12.0 in /jvm-packages (#8548) 
Bumps commons-lang3 from 3.9 to 3.12.0.

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 2022-12-06 20:13:46 +08:00
dependabot[bot]
ed1a4f3205
Bump maven-source-plugin from 2.2.1 to 3.2.1 in /jvm-packages (#8549) 
Bumps [maven-source-plugin](https://github.com/apache/maven-source-plugin) from 2.2.1 to 3.2.1.
- [Release notes](https://github.com/apache/maven-source-plugin/releases)
- [Commits](https://github.com/apache/maven-source-plugin/compare/maven-source-plugin-2.2.1...maven-source-plugin-3.2.1)

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 2022-12-06 14:10:19 +08:00
dependabot[bot]
e85c9b987b
Bump maven-site-plugin from 3.0 to 3.12.1 in /jvm-packages (#8533) 
Bumps [maven-site-plugin](https://github.com/apache/maven-site-plugin) from 3.0 to 3.12.1.
- [Release notes](https://github.com/apache/maven-site-plugin/releases)
- [Commits](https://github.com/apache/maven-site-plugin/compare/maven-site-plugin-3.0...maven-site-plugin-3.12.1)

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 2022-12-06 11:35:53 +08:00
dependabot[bot]
2790e3091f
Bump maven-assembly-plugin from 2.6 to 3.4.2 in /jvm-packages (#8521) 
Bumps [maven-assembly-plugin](https://github.com/apache/maven-assembly-plugin) from 2.6 to 3.4.2.
- [Release notes](https://github.com/apache/maven-assembly-plugin/releases)
- [Commits](https://github.com/apache/maven-assembly-plugin/compare/maven-assembly-plugin-2.6...maven-assembly-plugin-3.4.2)

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 2022-12-06 04:07:04 +08:00
dependabot[bot]
0c1769b3a5
Bump maven-javadoc-plugin in /jvm-packages/xgboost4j (#8534) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 2.10.3 to 3.4.1.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-2.10.3...maven-javadoc-plugin-3.4.1)

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 2022-12-06 02:30:46 +08:00
dependabot[bot]
67752e3967
Bump scala-maven-plugin from 3.2.2 to 4.8.0 in /jvm-packages (#8532) 
Bumps scala-maven-plugin from 3.2.2 to 4.8.0.

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 2022-12-06 00:58:30 +08:00
Philip Hyunsu Cho
42c5ee5588
[jvm-packages] Bump version of akka packages (#8524) 2022-12-05 22:45:00 +08:00
dependabot[bot]
d8d2eefa63
Bump junit from 4.13.1 to 4.13.2 in /jvm-packages/xgboost4j-gpu (#8516) 
Bumps [junit](https://github.com/junit-team/junit4) from 4.13.1 to 4.13.2.
- [Release notes](https://github.com/junit-team/junit4/releases)
- [Changelog](https://github.com/junit-team/junit4/blob/main/doc/ReleaseNotes4.13.1.md)
- [Commits](https://github.com/junit-team/junit4/compare/r4.13.1...r4.13.2)

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 2022-12-05 19:11:33 +08:00
dependabot[bot]
8e8d3ac708
Bump kryo from 4.0.2 to 5.3.0 in /jvm-packages (#8503) 
Bumps [kryo](https://github.com/EsotericSoftware/kryo) from 4.0.2 to 5.3.0.
- [Release notes](https://github.com/EsotericSoftware/kryo/releases)
- [Commits](https://github.com/EsotericSoftware/kryo/compare/kryo-parent-4.0.2...kryo-parent-5.3.0)

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 2022-12-05 18:01:59 +08:00
dependabot[bot]
3bfe90c183
Bump exec-maven-plugin in /jvm-packages/xgboost4j-gpu (#8531) 
Bumps [exec-maven-plugin](https://github.com/mojohaus/exec-maven-plugin) from 1.6.0 to 3.1.0.
- [Release notes](https://github.com/mojohaus/exec-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/exec-maven-plugin/compare/exec-maven-plugin-1.6.0...exec-maven-plugin-3.1.0)

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 2022-12-05 17:41:41 +08:00
dependabot[bot]
a903241fbf
Bump maven-javadoc-plugin in /jvm-packages/xgboost4j-gpu (#8530) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 2.10.3 to 3.4.1.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-2.10.3...maven-javadoc-plugin-3.4.1)

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 2022-12-05 16:32:08 +08:00
Bobby Wang
f1e9bbcee5
[breakinig] [jvm-packages] change DeviceQuantileDmatrix into QuantileDMatrix (#8461) 2022-12-05 12:23:21 +08:00
dependabot[bot]
c0609b98f1
Bump exec-maven-plugin from 1.6.0 to 3.1.0 in /jvm-packages/xgboost4j (#8518) 
Bumps [exec-maven-plugin](https://github.com/mojohaus/exec-maven-plugin) from 1.6.0 to 3.1.0.
- [Release notes](https://github.com/mojohaus/exec-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/exec-maven-plugin/compare/exec-maven-plugin-1.6.0...exec-maven-plugin-3.1.0)

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 2022-12-02 17:24:22 -08:00
dependabot[bot]
fcafd3a777
Bump maven-jar-plugin from 3.0.2 to 3.3.0 in /jvm-packages (#8506) 
Bumps [maven-jar-plugin](https://github.com/apache/maven-jar-plugin) from 3.0.2 to 3.3.0.
- [Release notes](https://github.com/apache/maven-jar-plugin/releases)
- [Commits](https://github.com/apache/maven-jar-plugin/compare/maven-jar-plugin-3.0.2...maven-jar-plugin-3.3.0)

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 2022-12-02 17:21:01 -08:00
dependabot[bot]
b23e97f8b0
Bump maven-resources-plugin from 3.1.0 to 3.3.0 in /jvm-packages (#8504) 
Bumps [maven-resources-plugin](https://github.com/apache/maven-resources-plugin) from 3.1.0 to 3.3.0.
- [Release notes](https://github.com/apache/maven-resources-plugin/releases)
- [Commits](https://github.com/apache/maven-resources-plugin/compare/maven-resources-plugin-3.1.0...maven-resources-plugin-3.3.0)

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 2022-12-02 17:20:37 -08:00
dependabot[bot]
f747e05eac
Bump maven-deploy-plugin from 2.8.2 to 3.0.0 in /jvm-packages (#8502) 
Bumps [maven-deploy-plugin](https://github.com/apache/maven-deploy-plugin) from 2.8.2 to 3.0.0.
- [Release notes](https://github.com/apache/maven-deploy-plugin/releases)
- [Commits](https://github.com/apache/maven-deploy-plugin/compare/maven-deploy-plugin-2.8.2...maven-deploy-plugin-3.0.0)

---
updated-dependencies:
- dependency-name: org.apache.maven.plugins:maven-deploy-plugin
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-12-01 16:39:59 -08:00
Philip Hyunsu Cho
2546d139d6
[jvm-packages] Add missing commons-lang3 dependency to xgboost4j-gpu (#8508) 
* [jvm-packages] Add missing commons-lang3 dependency to xgboost4j-gpu

* Update commons-lang3
 2022-12-01 16:27:11 -08:00
Philip Hyunsu Cho
f550109641
Bump some old dependencies of JVM packages (#8456) 2022-11-30 23:04:08 -08:00
Jiaming Yuan
284dcf8d22
Add script for change version. (#8443) 
- Replace jvm regex replacement script with mvn command.
- Replace cmake script for python version with python script.
- Automate rest of the manual steps.

The script can handle dev branch, rc release, and formal release version.
 2022-11-24 00:06:39 +08:00
Robert Maynard
16f96b6cfb
Work with newer thrust and libcudacxx (#8454) 
* Thrust 1.17 removes the experimental/pinned_allocator.

When xgboost is brought into a large project it can
be compiled against Thrust 1.17+ which don't offer
this experimental allocator.

To ensure that going forward xgboost works in all environments we provide a xgboost namespaced version of
the pinned_allocator that previously was in Thrust.
 2022-11-11 04:22:53 +08:00
Jiaming Yuan
f73520bfff
Bump development version to 2.0. (#8390) 2022-10-28 15:21:19 +08:00
Rong Ou
668b8a0ea4
[Breaking] Switch from rabit to the collective communicator (#8257) 
* Switch from rabit to the collective communicator

* fix size_t specialization

* really fix size_t

* try again

* add include

* more include

* fix lint errors

* remove rabit includes

* fix pylint error

* return dict from communicator context

* fix communicator shutdown

* fix dask test

* reset communicator mocklist

* fix distributed tests

* do not save device communicator

* fix jvm gpu tests

* add python test for federated communicator

* Update gputreeshap submodule

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-10-05 14:39:01 -08:00
Jiaming Yuan
f835368bcf
Mark next release as 1.7 instead of 2.0 (#8281) 2022-09-28 14:33:37 +08:00
Bobby Wang
8d247f0d64
[jvm-packages] fix spark-rapids compatibility issue (#8240) 
* [jvm-packages] fix spark-rapids compatibility issue

spark-rapids (from 22.10) has shimmed GpuColumnVector, which means
we can't call it directly. So this PR call the UnshimmedGpuColumnVector
 2022-09-22 23:31:29 +08:00
Rong Ou
7d43e74e71
JNI wrapper for the collective communicator (#8242) 2022-09-21 04:20:25 +08:00
dependabot[bot]
93966b0d19
Bump hadoop-common from 3.2.3 to 3.2.4 in /jvm-packages/xgboost4j-flink (#8157) 
Bumps hadoop-common from 3.2.3 to 3.2.4.

---
updated-dependencies:
- dependency-name: org.apache.hadoop:hadoop-common
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-08-15 06:47:27 -08:00
Bobby Wang
a68580e2a7
[jvm-packages] fix executor crashing issue when transforming on xgboost4j-spark-gpu (#8025) 
* [jvm-packages] fix executor crashing issue when transforming on xgboost4j-spark-gpu

the API XGBoosterSetParam is not thread-safe. Dring the phase of transforming,
XGBoost runs several transforming tasks at a time, and each of them will set
the "gpu_id" and "predictor" parameters, so if several tasks (multi-threads)
all XGBoosterSetParam simultaneously, it may cause the memory to be corrupted
and cause SIGSEGV.

This PR first get the booster from broadcast and set to the correct gpu_id
and predictor, and then all transforming taskes will use the same booster to
do the transforming.
 2022-06-24 01:18:41 +08:00