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Author SHA1 Message Date
Jiaming Yuan
6eaddaa9c3
[CI] Fix CI with updated dependencies. (#8631) 
* [CI] Fix CI with updated dependencies.

- Fix jvm package get iris.

* Skip SHAP test for now.

* Revert "Skip SHAP test for now."

This reverts commit 9aa28b4d8aee53fa95d92d2a879c6783ff4b2faa.

* Catch all exceptions.
 2023-01-03 21:04:04 -08:00
dependabot[bot]
20e6087579
Bump kryo from 5.3.0 to 5.4.0 in /jvm-packages (#8629) 
Bumps [kryo](https://github.com/EsotericSoftware/kryo) from 5.3.0 to 5.4.0.
- [Release notes](https://github.com/EsotericSoftware/kryo/releases)
- [Commits](https://github.com/EsotericSoftware/kryo/compare/kryo-parent-5.3.0...kryo-parent-5.4.0)

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 2023-01-03 18:44:39 +08:00
dependabot[bot]
0c38ca7f6e
Bump nexus-staging-maven-plugin from 1.6.7 to 1.6.13 in /jvm-packages (#8600) 2022-12-15 08:44:05 +00:00
dependabot[bot]
eac980fbfc
Bump maven-checkstyle-plugin from 3.1.2 to 3.2.0 in /jvm-packages (#8594) 
Bumps [maven-checkstyle-plugin](https://github.com/apache/maven-checkstyle-plugin) from 3.1.2 to 3.2.0.
- [Release notes](https://github.com/apache/maven-checkstyle-plugin/releases)
- [Commits](https://github.com/apache/maven-checkstyle-plugin/compare/maven-checkstyle-plugin-3.1.2...maven-checkstyle-plugin-3.2.0)

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 2022-12-14 19:46:03 +08:00
dependabot[bot]
f64871c74a
Bump spark.version from 3.0.1 to 3.0.3 in /jvm-packages (#8593) 
Bumps `spark.version` from 3.0.1 to 3.0.3.

Updates `spark-mllib_2.12` from 3.0.1 to 3.0.3

Updates `spark-core_2.12` from 3.0.1 to 3.0.3

Updates `spark-sql_2.12` from 3.0.1 to 3.0.3

---
updated-dependencies:
- dependency-name: org.apache.spark:spark-mllib_2.12
  dependency-type: direct:production
  update-type: version-update:semver-patch
- dependency-name: org.apache.spark:spark-core_2.12
  dependency-type: direct:production
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- dependency-name: org.apache.spark:spark-sql_2.12
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 2022-12-14 17:23:48 +08:00
dependabot[bot]
5aeb8f7009
Bump maven-gpg-plugin from 1.5 to 3.0.1 in /jvm-packages (#8571) 2022-12-08 06:59:11 +00:00
dependabot[bot]
f592a5125b
Bump flink.version from 1.7.2 to 1.8.3 in /jvm-packages (#8561) 2022-12-07 20:53:22 +00:00
dependabot[bot]
27aea6c7b5
Bump maven-surefire-plugin from 2.19.1 to 2.22.2 in /jvm-packages (#8562) 2022-12-07 17:56:05 +00:00
dependabot[bot]
4f1e453ff5
Bump maven-project-info-reports-plugin in /jvm-packages (#8560) 
Bumps [maven-project-info-reports-plugin](https://github.com/apache/maven-project-info-reports-plugin) from 2.2 to 3.4.1.
- [Release notes](https://github.com/apache/maven-project-info-reports-plugin/releases)
- [Commits](https://github.com/apache/maven-project-info-reports-plugin/compare/maven-project-info-reports-plugin-2.2...maven-project-info-reports-plugin-3.4.1)

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 2022-12-07 14:33:29 +08:00
dependabot[bot]
7774bf628e
Bump scalatest-maven-plugin from 1.0 to 2.2.0 in /jvm-packages (#8509) 
Bumps [scalatest-maven-plugin](https://github.com/scalatest/scalatest-maven-plugin) from 1.0 to 2.2.0.
- [Release notes](https://github.com/scalatest/scalatest-maven-plugin/releases)
- [Commits](https://github.com/scalatest/scalatest-maven-plugin/commits/release-2.2.0)

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- dependency-name: org.scalatest:scalatest-maven-plugin
  dependency-type: direct:production
  update-type: version-update:semver-major
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 2022-12-06 21:34:22 +08:00
dependabot[bot]
4a99c9bdb8
Bump commons-lang3 from 3.9 to 3.12.0 in /jvm-packages (#8548) 
Bumps commons-lang3 from 3.9 to 3.12.0.

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 2022-12-06 20:13:46 +08:00
dependabot[bot]
ed1a4f3205
Bump maven-source-plugin from 2.2.1 to 3.2.1 in /jvm-packages (#8549) 
Bumps [maven-source-plugin](https://github.com/apache/maven-source-plugin) from 2.2.1 to 3.2.1.
- [Release notes](https://github.com/apache/maven-source-plugin/releases)
- [Commits](https://github.com/apache/maven-source-plugin/compare/maven-source-plugin-2.2.1...maven-source-plugin-3.2.1)

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 2022-12-06 14:10:19 +08:00
dependabot[bot]
e85c9b987b
Bump maven-site-plugin from 3.0 to 3.12.1 in /jvm-packages (#8533) 
Bumps [maven-site-plugin](https://github.com/apache/maven-site-plugin) from 3.0 to 3.12.1.
- [Release notes](https://github.com/apache/maven-site-plugin/releases)
- [Commits](https://github.com/apache/maven-site-plugin/compare/maven-site-plugin-3.0...maven-site-plugin-3.12.1)

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 2022-12-06 11:35:53 +08:00
dependabot[bot]
2790e3091f
Bump maven-assembly-plugin from 2.6 to 3.4.2 in /jvm-packages (#8521) 
Bumps [maven-assembly-plugin](https://github.com/apache/maven-assembly-plugin) from 2.6 to 3.4.2.
- [Release notes](https://github.com/apache/maven-assembly-plugin/releases)
- [Commits](https://github.com/apache/maven-assembly-plugin/compare/maven-assembly-plugin-2.6...maven-assembly-plugin-3.4.2)

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 2022-12-06 04:07:04 +08:00
dependabot[bot]
0c1769b3a5
Bump maven-javadoc-plugin in /jvm-packages/xgboost4j (#8534) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 2.10.3 to 3.4.1.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-2.10.3...maven-javadoc-plugin-3.4.1)

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 2022-12-06 02:30:46 +08:00
dependabot[bot]
67752e3967
Bump scala-maven-plugin from 3.2.2 to 4.8.0 in /jvm-packages (#8532) 
Bumps scala-maven-plugin from 3.2.2 to 4.8.0.

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- dependency-name: net.alchim31.maven:scala-maven-plugin
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 2022-12-06 00:58:30 +08:00
Philip Hyunsu Cho
42c5ee5588
[jvm-packages] Bump version of akka packages (#8524) 2022-12-05 22:45:00 +08:00
dependabot[bot]
d8d2eefa63
Bump junit from 4.13.1 to 4.13.2 in /jvm-packages/xgboost4j-gpu (#8516) 
Bumps [junit](https://github.com/junit-team/junit4) from 4.13.1 to 4.13.2.
- [Release notes](https://github.com/junit-team/junit4/releases)
- [Changelog](https://github.com/junit-team/junit4/blob/main/doc/ReleaseNotes4.13.1.md)
- [Commits](https://github.com/junit-team/junit4/compare/r4.13.1...r4.13.2)

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  dependency-type: direct:development
  update-type: version-update:semver-patch
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 2022-12-05 19:11:33 +08:00
dependabot[bot]
8e8d3ac708
Bump kryo from 4.0.2 to 5.3.0 in /jvm-packages (#8503) 
Bumps [kryo](https://github.com/EsotericSoftware/kryo) from 4.0.2 to 5.3.0.
- [Release notes](https://github.com/EsotericSoftware/kryo/releases)
- [Commits](https://github.com/EsotericSoftware/kryo/compare/kryo-parent-4.0.2...kryo-parent-5.3.0)

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- dependency-name: com.esotericsoftware:kryo
  dependency-type: direct:production
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 2022-12-05 18:01:59 +08:00
dependabot[bot]
3bfe90c183
Bump exec-maven-plugin in /jvm-packages/xgboost4j-gpu (#8531) 
Bumps [exec-maven-plugin](https://github.com/mojohaus/exec-maven-plugin) from 1.6.0 to 3.1.0.
- [Release notes](https://github.com/mojohaus/exec-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/exec-maven-plugin/compare/exec-maven-plugin-1.6.0...exec-maven-plugin-3.1.0)

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- dependency-name: org.codehaus.mojo:exec-maven-plugin
  dependency-type: direct:production
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 2022-12-05 17:41:41 +08:00
dependabot[bot]
a903241fbf
Bump maven-javadoc-plugin in /jvm-packages/xgboost4j-gpu (#8530) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 2.10.3 to 3.4.1.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-2.10.3...maven-javadoc-plugin-3.4.1)

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 2022-12-05 16:32:08 +08:00
Bobby Wang
f1e9bbcee5
[breakinig] [jvm-packages] change DeviceQuantileDmatrix into QuantileDMatrix (#8461) 2022-12-05 12:23:21 +08:00
dependabot[bot]
c0609b98f1
Bump exec-maven-plugin from 1.6.0 to 3.1.0 in /jvm-packages/xgboost4j (#8518) 
Bumps [exec-maven-plugin](https://github.com/mojohaus/exec-maven-plugin) from 1.6.0 to 3.1.0.
- [Release notes](https://github.com/mojohaus/exec-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/exec-maven-plugin/compare/exec-maven-plugin-1.6.0...exec-maven-plugin-3.1.0)

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- dependency-name: org.codehaus.mojo:exec-maven-plugin
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 2022-12-02 17:24:22 -08:00
dependabot[bot]
fcafd3a777
Bump maven-jar-plugin from 3.0.2 to 3.3.0 in /jvm-packages (#8506) 
Bumps [maven-jar-plugin](https://github.com/apache/maven-jar-plugin) from 3.0.2 to 3.3.0.
- [Release notes](https://github.com/apache/maven-jar-plugin/releases)
- [Commits](https://github.com/apache/maven-jar-plugin/compare/maven-jar-plugin-3.0.2...maven-jar-plugin-3.3.0)

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 2022-12-02 17:21:01 -08:00
dependabot[bot]
b23e97f8b0
Bump maven-resources-plugin from 3.1.0 to 3.3.0 in /jvm-packages (#8504) 
Bumps [maven-resources-plugin](https://github.com/apache/maven-resources-plugin) from 3.1.0 to 3.3.0.
- [Release notes](https://github.com/apache/maven-resources-plugin/releases)
- [Commits](https://github.com/apache/maven-resources-plugin/compare/maven-resources-plugin-3.1.0...maven-resources-plugin-3.3.0)

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 2022-12-02 17:20:37 -08:00
dependabot[bot]
f747e05eac
Bump maven-deploy-plugin from 2.8.2 to 3.0.0 in /jvm-packages (#8502) 
Bumps [maven-deploy-plugin](https://github.com/apache/maven-deploy-plugin) from 2.8.2 to 3.0.0.
- [Release notes](https://github.com/apache/maven-deploy-plugin/releases)
- [Commits](https://github.com/apache/maven-deploy-plugin/compare/maven-deploy-plugin-2.8.2...maven-deploy-plugin-3.0.0)

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 2022-12-01 16:39:59 -08:00
Philip Hyunsu Cho
2546d139d6
[jvm-packages] Add missing commons-lang3 dependency to xgboost4j-gpu (#8508) 
* [jvm-packages] Add missing commons-lang3 dependency to xgboost4j-gpu

* Update commons-lang3
 2022-12-01 16:27:11 -08:00
Philip Hyunsu Cho
f550109641
Bump some old dependencies of JVM packages (#8456) 2022-11-30 23:04:08 -08:00
Jiaming Yuan
284dcf8d22
Add script for change version. (#8443) 
- Replace jvm regex replacement script with mvn command.
- Replace cmake script for python version with python script.
- Automate rest of the manual steps.

The script can handle dev branch, rc release, and formal release version.
 2022-11-24 00:06:39 +08:00
Robert Maynard
16f96b6cfb
Work with newer thrust and libcudacxx (#8454) 
* Thrust 1.17 removes the experimental/pinned_allocator.

When xgboost is brought into a large project it can
be compiled against Thrust 1.17+ which don't offer
this experimental allocator.

To ensure that going forward xgboost works in all environments we provide a xgboost namespaced version of
the pinned_allocator that previously was in Thrust.
 2022-11-11 04:22:53 +08:00
Jiaming Yuan
f73520bfff
Bump development version to 2.0. (#8390) 2022-10-28 15:21:19 +08:00
Rong Ou
668b8a0ea4
[Breaking] Switch from rabit to the collective communicator (#8257) 
* Switch from rabit to the collective communicator

* fix size_t specialization

* really fix size_t

* try again

* add include

* more include

* fix lint errors

* remove rabit includes

* fix pylint error

* return dict from communicator context

* fix communicator shutdown

* fix dask test

* reset communicator mocklist

* fix distributed tests

* do not save device communicator

* fix jvm gpu tests

* add python test for federated communicator

* Update gputreeshap submodule

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-10-05 14:39:01 -08:00
Jiaming Yuan
f835368bcf
Mark next release as 1.7 instead of 2.0 (#8281) 2022-09-28 14:33:37 +08:00
Bobby Wang
8d247f0d64
[jvm-packages] fix spark-rapids compatibility issue (#8240) 
* [jvm-packages] fix spark-rapids compatibility issue

spark-rapids (from 22.10) has shimmed GpuColumnVector, which means
we can't call it directly. So this PR call the UnshimmedGpuColumnVector
 2022-09-22 23:31:29 +08:00
Rong Ou
7d43e74e71
JNI wrapper for the collective communicator (#8242) 2022-09-21 04:20:25 +08:00
dependabot[bot]
93966b0d19
Bump hadoop-common from 3.2.3 to 3.2.4 in /jvm-packages/xgboost4j-flink (#8157) 
Bumps hadoop-common from 3.2.3 to 3.2.4.

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 2022-08-15 06:47:27 -08:00
Bobby Wang
a68580e2a7
[jvm-packages] fix executor crashing issue when transforming on xgboost4j-spark-gpu (#8025) 
* [jvm-packages] fix executor crashing issue when transforming on xgboost4j-spark-gpu

the API XGBoosterSetParam is not thread-safe. Dring the phase of transforming,
XGBoost runs several transforming tasks at a time, and each of them will set
the "gpu_id" and "predictor" parameters, so if several tasks (multi-threads)
all XGBoosterSetParam simultaneously, it may cause the memory to be corrupted
and cause SIGSEGV.

This PR first get the booster from broadcast and set to the correct gpu_id
and predictor, and then all transforming taskes will use the same booster to
do the transforming.
 2022-06-24 01:18:41 +08:00
Rong Ou
e5ec546da5
[Breaking] Remove rabit support for custom reductions and grow_local_histmaker updater (#7992) 2022-06-21 15:08:23 +08:00
Jiaming Yuan
bb47fd8c49
[jvm-packages] Change log level for tracker message. (#7968) 2022-06-09 18:15:08 +08:00
Bobby Wang
78694405a6
[jvm-packages] add jni for setting feature name and type (#7966) 2022-06-03 11:09:48 +08:00
Bobby Wang
545fd4548e
[jvm-packages] refactor xgboost read/write (#7956) 
1. Removed the duplicated Default XGBoost read/write which is copied from
  spark 2.3.x
2. Put some utils into util package
 2022-06-01 11:38:49 +08:00
Yang Jiandan
27c66f12d1
set log level as ERROR for trackerProcess has some stderr output (#7952) 2022-05-31 22:54:38 +08:00
Bobby Wang
6275cdc486
[jvm-packages] add format option when saving a model (#7940) 2022-05-30 15:49:59 +08:00
Bobby Wang
fbc3d861bb
[jvm-packages] remove default parameters (#7938) 2022-05-28 10:31:19 +08:00
Daniel Clausen
755d9d4609
[JVM-Packages] Auto-detection of MUSL is replaced by system properties (#7921) 
This PR removes auto-detection of MUSL-based Linux systems in favor of system properties the user can set to configure a specific path for a native library.
 2022-05-26 10:53:15 +08:00
Bobby Wang
5ef33adf68
[jvm-packges] set the correct objective if user doesn't explicitly set it (#7781) 2022-05-18 14:05:18 +08:00
Bobby Wang
b41cf92dc2
[jvm-packages] move dmatrix building into rabit context for cpu pipeline (#7908) 2022-05-17 14:52:25 +08:00
Bobby Wang
11e46e4bc0
[Breaking][jvm-packages] make classification model be xgboost-compatible (#7896) 2022-05-14 15:43:05 +08:00
Bobby Wang
9fa7ed1743
[Breaking][jvm-packages] remove timeoutRequestWorkers parameter (#7839) 2022-05-13 16:26:25 +08:00
Michael Allman
f7db16add1
Ignore all Java exceptions when looking for Linux musl support (#7844) 2022-04-28 15:44:30 +08:00