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92 Commits

Author SHA1 Message Date
Philip Hyunsu Cho
e4dd6051a0
Use good commit message when updating Rapids 2023-06-08 19:30:25 -07:00
Philip Hyunsu Cho
2ec2ecf013
Allow admin to manually trigger update_rapids workflow 2023-06-08 19:21:36 -07:00
Philip Hyunsu Cho
181dee13e9
Update update_rapids.yml 2023-06-08 19:11:49 -07:00
Philip Hyunsu Cho
3bf0f145bb
Update update_rapids.yml 2023-06-03 13:12:12 -07:00
Philip Hyunsu Cho
288539ac78
[CI] Automatically bump Rapids version in containers (#9234) 
* [CI] Use RAPIDS 23.04

* [CI] Remove outdated filters in dependabot

* [CI] Automatically bump Rapids version in containers

* Automate pull request
 2023-06-02 08:17:41 -07:00
Boris
a01df102c9
Scala 2.13 support. (#9099) 
1. Updated the test logic
2. Added smoke tests for Spark examples.
3. Added integration tests for Spark with Scala 2.13
 2023-05-27 19:34:02 +08:00
Philip Hyunsu Cho
0cd4382d72
Fix config-settings handling in pip install (#9115) 
* Fix config_settings handling in pip install

* Fix formatting

* Fix flag use_system_libxgboost

* Add setuptools to doc requirements.txt

* Fix mypy
 2023-05-09 17:54:20 -07:00
Jiaming Yuan
fa267ad093
[CI] Freeze R version to 4.2.0 with MSVC. (#9104) 2023-04-27 22:48:31 +08:00
Boris
0e7377ba9c
Updated flink 1.8 -> 1.17. Added smoke tests for Flink (#9046) 2023-04-26 18:41:11 +08:00
Philip Hyunsu Cho
a5cd2412de
Replace setup.py with pyproject.toml (#9021) 
* Create pyproject.toml
* Implement a custom build backend (see below) in packager directory. Build logic from setup.py has been refactored and migrated into the new backend.
* Tested: pip wheel . (build wheel), python -m build --sdist . (source distribution)
 2023-04-20 13:51:39 -07:00
Philip Hyunsu Cho
8dc1e4b3ea
Improve doxygen (#8959) 
* Remove Sphinx build from GH Action

* Build Doxygen as part of RTD build

* Add jQuery
 2023-03-21 09:22:11 -07:00
Jiaming Yuan
594371e35b
Fix CPP lint. (#8807) 2023-02-15 20:16:35 +08:00
Jiaming Yuan
e62167937b
[CI] Update action cache for jvm tests. (#8806) 2023-02-15 18:43:48 +08:00
Hamel Husain
16ef016ba7
[CI] Use bash -l {0} as the default in GitHub Actions (#8741) 2023-01-31 15:00:29 +08:00
Jiaming Yuan
badeff1d74
Init estimation for regression. (#8272) 2023-01-11 02:04:56 +08:00
James Lamb
dd72af2620
[CI] fix git errors related to directory ownership (#8628) 2023-01-01 16:05:44 -08:00
James Lamb
c7e82b5914
[R] enforce lintr checks (fixes #8012) (#8613) 2022-12-25 05:02:56 +08:00
James Lamb
05fc6f3ca9
[R] [ci] move linting code out of package (#8545) 2022-12-07 03:18:17 +08:00
Jiaming Yuan
d99bdd1b1e
[CI] Fix github action mismatched glibcxx. (#8551) 
* [CI] Fix github action mismatched glibcxx.

Split up the Linux test to use the toolchain from conda forge.
 2022-12-06 17:42:15 +08:00
Philip Hyunsu Cho
7c6f2346d3
[jvm-packages] Configure dependabot properly (#8507) 
* [jvm-packages] Configure dependabot properly

* Allow automatic updates for Scala and Spark within the same major version
 2022-12-01 16:26:47 -08:00
Philip Hyunsu Cho
9a98e79649
[jvm-packages] Set up dependabot (#8501) 2022-11-30 22:46:17 -08:00
Joyce
3b8a0e08f7
feat: use commit hash instead of version to actions workflows (#8460) 
Signed-off-by: Joyce Brum <joycebrum@google.com>

Signed-off-by: Joyce Brum <joycebrum@google.com>
 2022-11-17 22:04:11 +08:00
Jiaming Yuan
a83748eb45
[CI] Revise R tests. (#8430) 
- Use the standard package check (check on the tarball instead of the source tree).
- Run commands in parallel.
- Cleanup dependencies installation.
- Replace makefile.
- Documentation.
- Test using the image from rhub.
 2022-11-09 09:12:13 +08:00
Jiaming Yuan
0b36f8fba1
[R] Fix CRAN test notes. (#8428) 
- Limit the number of used CPU cores in examples.
- Add a note for the constraint.
- Bring back the cleanup script.
 2022-11-09 02:03:30 +08:00
Jiaming Yuan
2ed3c29c8a
[CI] Cleanup github action tests. (#8397) 
- Merge doxygen build with sphinx.
- Use mamba on non-windows Github Action.
 2022-10-29 06:04:27 +08:00
Joyce
7174d60ed2
Fix Scorecard Github Action not working (#8402) 
* chore: create security policy

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* chore: only latest release on security police

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* chore: security policy support on effort base

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* Use dedicated e-mail address for security reporting

* fix: upgrade scorecard action version

Signed-off-by: Joyce Brum <joycebrum@google.com>

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>
Signed-off-by: Joyce Brum <joycebrum@google.com>
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-10-28 16:25:43 -04:00
Jiaming Yuan
cfd2a9f872
Extract dask and spark test into distributed test. (#8395) 
- Move test files.
- Run spark and dask separately to prevent conflicts.
- Gather common code into the testing module.
 2022-10-28 16:24:32 +08:00
Jiaming Yuan
a2593e60bf
Speedup R test on github. (#8388) 2022-10-26 18:02:27 +08:00
Jiaming Yuan
c69af90319
Fix github action r tests. (#8364) 2022-10-20 01:07:18 +08:00
Philip Hyunsu Cho
a71421e825
[CI] Update GitHub Actions to use macos-11 (#8321) 2022-10-08 00:40:43 -07:00
Alex
1082ccd3cc
GitHub Workflows security hardening (#8267) 
Signed-off-by: Alex <aleksandrosansan@gmail.com>
 2022-09-27 00:54:27 +08:00
Joyce
be5b95e743
Enable OpenSSF Scorecard Github Action (#8263) 
* chore: enable scorecard github action

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* docs: add scorecard badge to the README file

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>
 2022-09-25 13:02:36 -07:00
Jiaming Yuan
dd44ac91b8
[CI] Use binary R dependencies on Windows. (#8241) 2022-09-09 19:51:15 -07:00
Jiaming Yuan
3970e4e6bb
Move pylint helper from dmlc-core. (#8101) 
* Move pylint helper from dmlc-core.

- Move the helper into the XGBoost ci_build.
- Run it with multiprocessing.

* Fix original test.
 2022-07-23 08:12:37 +08:00
Jiaming Yuan
8bdea72688
[Python] Require black and isort for new Python files. (#8096) 
* [Python] Require black and isort for new Python files.

- Require black and isort for spark and dask module.

These files are relatively new and are more conform to the black formatter. We will
convert the rest of the library as we move forward.

Other libraries including dask/distributed and optuna use the same formatting style and
have a more strict standard. The black formatter is indeed quite nice, automating it can
help us unify the code style.

- Gather Python checks into a single script.
 2022-07-20 10:25:24 +08:00
Jiaming Yuan
dae7a41baa
Update Python requirement to >=3.8. (#8071) 
Additional changes:
- Use mamba for CPU test on Jenkins.
- Cleanup CPU test dependencies.
- Restore some of the modin tests
 2022-07-14 18:01:47 +08:00
WeichenXu
176fec8789
PySpark XGBoost integration (#8020) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2022-07-13 13:11:18 +08:00
Jiaming Yuan
f24bfc7684
Bump R cache version. (#8044) 2022-07-03 03:53:05 +08:00
Jiaming Yuan
e58e417603
[CI] Fix lintr error. (#8011) 2022-06-20 22:17:14 +08:00
Jiaming Yuan
718472dbe2
[CI] Upgrade GitHub action Windows workers. (#7739) 2022-03-20 01:44:33 +08:00
Jiaming Yuan
1441a6cd27
[CI] Update R cache. (#7646) 2022-02-11 19:50:11 +08:00
Philip Hyunsu Cho
34a238ca98
[CI] Clean up Python wheel build pipeline (#7626) 
* [CI] Always upload artifacts to [branch_name]/

* [CI] Move detailed setup inside build_python_wheels.sh

* Fix typo
 2022-02-03 00:55:44 -08:00
Philip Hyunsu Cho
f6e6d0b2c0
[CI] Build Python wheels for MacOS (x86_64 and arm64) (#7621) 
* Build Python wheels for OSX (x86_64 and arm64)

* Use Conda's libomp when running Python tests

* fix

* Add comment to explain CIBW_TARGET_OSX_ARM64

* Update release script

* Add comments in build_python_wheels.sh

* Document wheel pipeline
 2022-02-02 17:35:48 -08:00
Philip Hyunsu Cho
619c450a49
[CI] Add missing step extract_branch (#7479) 2021-11-24 17:35:59 +08:00
Jiaming Yuan
820e1c01ef
Fix macos package upload. (#7475) 
* Split up the tests.
 2021-11-24 03:43:49 +08:00
Jiaming Yuan
488f12a996
Fix github macos package upload. (#7474) 2021-11-24 00:29:11 +08:00
Philip Hyunsu Cho
96a9848c9e
[CI] Fix continuous delivery pipeline for MacOS (#7472) 2021-11-23 22:22:08 +08:00
Jiaming Yuan
38ca96c9fc
[CI] Install igraph as binary. (#7417) 2021-11-12 19:04:28 +08:00
Jiaming Yuan
239dbb3c0a
Move macos test to github action. (#7382) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2021-10-30 14:40:32 +08:00
Philip Hyunsu Cho
336af4f974
Work around a segfault observed in SparsePage::Push() (#7161) 
* Work around a segfault observed in SparsePage::Push()

* Revert "Work around a segfault observed in SparsePage::Push()"

This reverts commit 30934844d00908750a5442082eb4769b1489f6a9.

* Don't call vector::resize() inside OpenMP block

* Set GITHUB_PAT env var to fix R tests

* Use built-in GITHUB_TOKEN
 2021-08-08 02:12:30 -07:00