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54 Commits

Author SHA1 Message Date
Dmitry Razdoburdin
d7599e095b
[SYCL] Add dask support for distributed (#10812) 2024-09-22 02:01:57 +08:00
Jiaming Yuan
06c4246ff1
[CI] Workaround mypy errors. (#10754) 2024-08-27 02:54:11 +08:00
Jiaming Yuan
3d8107adb8
Support doc link for the sklearn module. (#10287) 2024-08-06 02:35:32 +08:00
Philip Hyunsu Cho
778751a1bb
Update the release script to download xgboost-cpu (#10657) 
* Update the release script to download xgboost-cpu

* Exclude mypy 1.11.1; un-cap pylint

* Exclude mypy 1.11.0 too
 2024-07-31 14:43:10 -07:00
Jiaming Yuan
827d0e8edb
[breaking] Bump Python requirement to 3.10. (#10434) 
- Bump the Python requirement.
- Fix type hints.
- Use loky to avoid deadlock.
- Workaround cupy-numpy compatibility issue on Windows caused by the `safe` casting rule.
- Simplify the repartitioning logic to avoid dask errors.
 2024-07-30 17:31:06 +08:00
Jiaming Yuan
cb62f9e73b
[EM] Prevent init with CUDA malloc resource. (#10606) 2024-07-21 05:08:29 +08:00
Jiaming Yuan
7ab93f3ce3
[CI] Fix test environment. (#10609) 
* [CI] Fix test environment.

* Remove shell.

* Remove.

* Update Dockerfile.i386
 2024-07-18 10:04:17 -07:00
Dmitry Razdoburdin
ce97de2a7c
replace channel for sycl dependencies (#10576) 
Co-authored-by: Dmitry Razdoburdin <>
 2024-07-12 18:28:54 +08:00
Philip Hyunsu Cho
4b88dfff24
[CI] Temporarily pin pylint to 3.2.3 (#10494) 
* [CI] Temporarily pin pylint to 3.2.3

* Add quotes

* Correct env
 2024-06-26 14:08:49 -07:00
Richard (Rick) Zamora
dc14f98f40
Avoid default tokenization in Dask (#10398) 
---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2024-06-14 19:44:54 +08:00
Jiaming Yuan
7354955cbb
Test federated plugin using GitHub action. (#10336) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2024-05-29 02:28:14 +08:00
Philip Hyunsu Cho
7ae5c972f9
[CI] Upgrade github workflows to use latest Conda setup action (#10320) 
Co-authored-by: Christian Clauss <cclauss@me.com>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2024-05-28 10:23:07 -07:00
Dmitry Razdoburdin
58513dc288
[SYCL] Add sampling initialization (#10216) 
---------

Co-authored-by: Dmitry Razdoburdin <>
 2024-04-25 04:35:52 +08:00
Dmitry Razdoburdin
381f1d3dc9
Add support inference on SYCL devices (#9800) 
---------

Co-authored-by: Dmitry Razdoburdin <>
Co-authored-by: Nikolay Petrov <nikolay.a.petrov@intel.com>
Co-authored-by: Alexandra <alexandra.epanchinzeva@intel.com>
 2023-12-04 16:15:57 +08:00
Philip Hyunsu Cho
5e6cb63a56
[CI] Set up CI for Mac M1 (#9699) 2023-10-22 23:33:19 -07:00
Jiaming Yuan
62e9387cd5
[ci] Update PySpark version. (#9214) 2023-05-31 03:00:44 +08:00
Philip Hyunsu Cho
a5cd2412de
Replace setup.py with pyproject.toml (#9021) 
* Create pyproject.toml
* Implement a custom build backend (see below) in packager directory. Build logic from setup.py has been refactored and migrated into the new backend.
* Tested: pip wheel . (build wheel), python -m build --sdist . (source distribution)
 2023-04-20 13:51:39 -07:00
Jiaming Yuan
bac22734fb
Remove ntree limit in python package. (#8345) 
- Remove `ntree_limit`. The parameter has been deprecated since 1.4.0.
- The SHAP package compatibility is broken.
 2023-03-31 19:01:55 +08:00
Jiaming Yuan
e27cda7626
[CI] Skip pyspark sparse tests. (#8675) 2023-01-14 05:37:00 +08:00
Jiaming Yuan
badeff1d74
Init estimation for regression. (#8272) 2023-01-11 02:04:56 +08:00
Philip Hyunsu Cho
35d8447282
[CI] Use conda-forge channel in conda (#8583) 2022-12-11 23:25:29 -08:00
Jiaming Yuan
d99bdd1b1e
[CI] Fix github action mismatched glibcxx. (#8551) 
* [CI] Fix github action mismatched glibcxx.

Split up the Linux test to use the toolchain from conda forge.
 2022-12-06 17:42:15 +08:00
Jiaming Yuan
2ed3c29c8a
[CI] Cleanup github action tests. (#8397) 
- Merge doxygen build with sphinx.
- Use mamba on non-windows Github Action.
 2022-10-29 06:04:27 +08:00
Jiaming Yuan
cfd2a9f872
Extract dask and spark test into distributed test. (#8395) 
- Move test files.
- Run spark and dask separately to prevent conflicts.
- Gather common code into the testing module.
 2022-10-28 16:24:32 +08:00
Rory Mitchell
ce0382dcb0
[CI] Refactor tests to reduce CI time. (#8312) 2022-10-12 11:32:06 +02:00
Jiaming Yuan
e47b3a3da3
Upgrade mypy. (#8302) 
Some breaking changes were made in mypy.
 2022-10-05 14:31:59 +08:00
WeichenXu
53d2a733b0
[pyspark] Make Xgboost estimator support using sparse matrix as optimization (#8145) 
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
 2022-08-19 01:57:28 +08:00
Jiaming Yuan
2cba1d9fcc
Fix compatibility with latest cupy. (#8129) 
* Fix compatibility with latest cupy.

* Freeze mypy.
 2022-08-01 15:24:42 +08:00
Jiaming Yuan
3970e4e6bb
Move pylint helper from dmlc-core. (#8101) 
* Move pylint helper from dmlc-core.

- Move the helper into the XGBoost ci_build.
- Run it with multiprocessing.

* Fix original test.
 2022-07-23 08:12:37 +08:00
Jiaming Yuan
8bdea72688
[Python] Require black and isort for new Python files. (#8096) 
* [Python] Require black and isort for new Python files.

- Require black and isort for spark and dask module.

These files are relatively new and are more conform to the black formatter. We will
convert the rest of the library as we move forward.

Other libraries including dask/distributed and optuna use the same formatting style and
have a more strict standard. The black formatter is indeed quite nice, automating it can
help us unify the code style.

- Gather Python checks into a single script.
 2022-07-20 10:25:24 +08:00
Jiaming Yuan
dae7a41baa
Update Python requirement to >=3.8. (#8071) 
Additional changes:
- Use mamba for CPU test on Jenkins.
- Cleanup CPU test dependencies.
- Restore some of the modin tests
 2022-07-14 18:01:47 +08:00
WeichenXu
176fec8789
PySpark XGBoost integration (#8020) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2022-07-13 13:11:18 +08:00
Philip Hyunsu Cho
2070afea02
[CI] Rotate package repository keys (#7943) 2022-05-26 17:06:46 -07:00
Philip Hyunsu Cho
e8eff3581b
[CI] Enable faulthandler to show details when 0xC0000005 error occurs (#7771) (#7775) 2022-03-31 17:40:06 +08:00
Xiaochang Wu
613ec36c5a
Support building SimpleDMatrix from Arrow data format (#7512) 
* Integrate with Arrow C data API.
* Support Arrow dataset.
* Support Arrow table.

Co-authored-by: Xiaochang Wu <xiaochang.wu@intel.com>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
Co-authored-by: Zhang Zhang <zhang.zhang@intel.com>
 2022-03-15 13:25:19 +08:00
Philip Hyunsu Cho
0149f81a5a
[CI] Fix S3 upload (#7662) 2022-02-16 01:35:27 -08:00
Philip Hyunsu Cho
f6e6d0b2c0
[CI] Build Python wheels for MacOS (x86_64 and arm64) (#7621) 
* Build Python wheels for OSX (x86_64 and arm64)

* Use Conda's libomp when running Python tests

* fix

* Add comment to explain CIBW_TARGET_OSX_ARM64

* Update release script

* Add comments in build_python_wheels.sh

* Document wheel pipeline
 2022-02-02 17:35:48 -08:00
Jiaming Yuan
9f20a3315e
Test with latest numpy. (#7573) 2022-01-19 00:46:23 +08:00
Jiaming Yuan
a1bcd33a3b
[breaking] Change internal model serialization to UBJSON. (#7556) 
* Use typed array for models.
* Change the memory snapshot format.
* Add new C API for saving to raw format.
 2022-01-16 02:11:53 +08:00
Jiaming Yuan
820e1c01ef
Fix macos package upload. (#7475) 
* Split up the tests.
 2021-11-24 03:43:49 +08:00
Jiaming Yuan
3b0b74fa94
[doc] Use RTD theme. (#7346) 2021-10-19 23:49:19 -07:00
Philip Hyunsu Cho
d04312b9c0
[CI] Fix hanging Python setup in Windows CI (#7186) 2021-08-24 22:03:51 -07:00
Jiaming Yuan
dcd84b3979
[CI] Configure RAPIDS, dask, modin (#7033) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2021-06-18 10:27:51 +08:00
Jiaming Yuan
ee4f51a631
Support for all primitive types from array. (#7003) 
* Change C API name.
* Test for all primitive types from array.
* Add native support for CPU 128 float.
* Convert boolean and float16 in Python.

* Fix dask version for now.
 2021-06-01 08:34:48 +08:00
Jiaming Yuan
29d6a5e2b8
[CI] Move appveyor tests to action (#6986) 
* Drop support for VS14, use VS15 instead.
* Drop support for mingw.
* Remove debug build.
* Split up jvm tests.
* Split up Python tests.
 2021-05-27 04:49:45 +08:00
Jiaming Yuan
34df1f588b
Reduce Travis environment setup time. (#6912) 
* Remove unused r from travis.
* Don't update homebrew.
* Don't install indirect/unused dependencies like libgit2, wget, openssl.
* Move graphviz installation to conda.
 2021-04-30 09:02:40 +08:00
Philip Hyunsu Cho
366f3cb9d8
Add use_rmm flag to global configuration (#6656) 
* Ensure RMM is 0.18 or later

* Add use_rmm flag to global configuration

* Modify XGBCachingDeviceAllocatorImpl to skip CUB when use_rmm=True

* Update the demo

* [CI] Pin NumPy to 1.19.4, since NumPy 1.19.5 doesn't work with latest Shap
 2021-03-09 14:53:05 -08:00
Jiaming Yuan
4656b09d5d
[breaking] Add prediction fucntion for DMatrix and use inplace predict for dask. (#6668) 
* Add a new API function for predicting on `DMatrix`.  This function aligns
with rest of the `XGBoosterPredictFrom*` functions on semantic of function
arguments.
* Purge `ntree_limit` from libxgboost, use iteration instead.
* [dask] Use `inplace_predict` by default for dask sklearn models.
* [dask] Run prediction shape inference on worker instead of client.

The breaking change is in the Python sklearn `apply` function, I made it to be
consistent with other prediction functions where `best_iteration` is used by
default.
 2021-02-08 18:26:32 +08:00
Jiaming Yuan
610ee632cc
[Breaking] Rename data to X in predict_proba. (#6555) 
New Scikit-Learn version uses keyword argument, and `X` is the predefined
keyword.

* Use pip to install latest Python graphviz on Windows CI.
 2020-12-28 21:36:03 +08:00
Philip Hyunsu Cho
84b726ef53
Vendor libgomp in the manylinux Python wheel (#6461) 
* Vendor libgomp in the manylinux2014_aarch64 wheel

* Use vault repo, since CentOS 6 has reached End-of-Life on Nov 30

* Vendor libgomp in the manylinux2010_x86_64 wheel

* Run verification step inside the container
 2020-12-03 19:55:32 -08:00