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Author SHA1 Message Date
Bobby WangandJiaming Yuan 89d6419fd5 [jvm-packages] add doc for xgboost4j-spark-gpu (#7779) 
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2022-04-07 11:35:01 +08:00
Bobby Wang 2454407f3a [jvm-packages] unify setFeaturesCol API for XGBoostRegressor (#7784) 2022-04-05 13:35:33 +08:00
Philip Hyunsu Cho e5ab8f3ebe [CI] Speed up CPU test pipeline (#7772) 2022-04-01 02:39:04 +08:00
Jiaming Yuan bcce17e688 Remove text loading in basic walk through demo. (#7753) 2022-04-01 00:59:42 +08:00
giuliohome c467e90ac1 [doc] Update doc for Kubernetes Operator (#7777) 2022-03-31 23:10:49 +08:00
Jiaming YuanandPhilip Hyunsu Cho fd78af404b Drop support for deprecated CUDA architectures. (#7774) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-03-31 21:42:23 +08:00
Jiaming Yuan 02dd7b6913 Remove use of distutils. (#7770) 
distutils is deprecated and replaced by other stdlib constructs.
 2022-03-31 19:03:10 +08:00
Philip Hyunsu Cho e8eff3581b [CI] Enable faulthandler to show details when 0xC0000005 error occurs (#7771) (#7775) 2022-03-31 17:40:06 +08:00
Jiaming Yuan 6fa1afdffc Avoid compiler warning about comparison. (#7768) 2022-03-31 08:52:14 +08:00
Jiaming Yuan 522636cb52 Bump version. (#7769) 2022-03-31 06:33:22 +08:00
Jiaming Yuan 9150fdbd4d Support pandas nullable types. (#7760) 2022-03-30 08:51:52 +08:00
Jiaming Yuan d4796482b5 Fix failures on R hub and Win builder. (#7763) 
* Update date.
* Workaround amalgamation build with clang. (SimpleDMatrix instantiation)
* Workaround compiler error with driver push.
* Revert autoconf requirement.
* Fix model IO on 32-bit environment. (i386)
* Clarify the function name.
 2022-03-30 07:14:33 +08:00
Jiaming Yuan a50b84244e Cleanup configuration for constraints. (#7758) 2022-03-29 04:22:46 +08:00
Jiaming Yuan 3c9b04460a Move num_parallel_tree to model parameter. (#7751) 
The size of forest should be a property of model itself instead of a training
hyper-parameter.
 2022-03-29 02:32:42 +08:00
Jiaming Yuan 8b3ecfca25 Mitigate flaky tests. (#7749) 
* Skip non-increasing test with external memory when subsample is used.
* Increase bin numbers for boost from prediction test. This mitigates the effect of
  non-deterministic partitioning.
 2022-03-28 21:20:50 +08:00
Christian Marquardt 39c5616af2 Added CPPFLAGS and LDFLAGS to the testing for OpenMP during R installation from source. (#7759) 2022-03-28 19:14:07 +08:00
Haoming Chen b37ff3d492 Fix cox objective test by using XGBOOST_PARALLEL_STABLE_SORT (#7756) 2022-03-26 17:58:30 +08:00
Jiaming Yuan b3ba0e8708 Check cupy lazily. (#7752) 2022-03-26 06:09:58 +08:00
Jiaming Yuan af0cf88921 Workaround compiler error. (#7745) 2022-03-25 17:05:14 +08:00
Jiaming Yuan 64575591d8 Use context in SetInfo. (#7687) 
* Use the name `Context`.
* Pass a context object into `SetInfo`.
* Add context to proxy matrix.
* Add context to iterative DMatrix.

This is to remove the use of the default number of threads during `SetInfo` as a follow-up on
removing the global omp variable while preparing for CUDA stream semantic.  Currently, XGBoost
uses the legacy CUDA stream, we will gradually remove them in the future in favor of non-blocking streams.
 2022-03-24 22:16:26 +08:00
Oleksandr PryimakandPhilip Hyunsu Cho f5b20286e2 [jvm-packages] Launch dev jvm image under my user (#4676) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-03-23 10:39:51 -07:00
ChengyangChengyang Gujiamingy
 		c92ab2ce49 Add type hints to core.py (#7707) 
Co-authored-by: Chengyang Gu <bridgream@gmail.com>
Co-authored-by: jiamingy <jm.yuan@outlook.com>
 2022-03-23 21:12:14 +08:00
Philip Hyunsu Cho 66cb4afc6c Update install doc (#7747) 2022-03-23 17:20:01 +08:00
AgingandZhuo Yuzhen f20ffa8db3 Update JVM dev build Dockerfile and shell script (#6792) 
Co-authored-by: Zhuo Yuzhen <yuzhuo@paypal.com>
 2022-03-22 16:39:10 -07:00
Jiaming Yuan 4d81c741e9 External memory support for hist (#7531) 
* Generate column matrix from gHistIndex.
* Avoid synchronization with the sparse page once the cache is written.
* Cleanups: Remove member variables/functions, change the update routine to look like approx and gpu_hist.
* Remove pruner.
 2022-03-22 00:13:20 +08:00
Jiaming Yuan cd55823112 Demo for using custom objective with multi-target regression. (#7736) 2022-03-20 17:44:25 +08:00
Jiaming Yuan 996cc705af Small cleanup to hist tree method. (#7735) 
* Remove special optimization using number of bins.
* Remove 1-based index for column sampling.
* Remove data layout.
* Unify update prediction cache.
 2022-03-20 03:44:55 +08:00
Jiaming Yuan 718472dbe2 [CI] Upgrade GitHub action Windows workers. (#7739) 2022-03-20 01:44:33 +08:00
Jiaming Yuan 9a400731d9 Replace device sync with stream sync. (#7737) 2022-03-19 23:22:23 +08:00
Jiaming Yuan da351621a1 [R] Fix parsing decision stump. (#7689) 2022-03-17 01:08:22 +08:00
Jiaming Yuan e78a38b837 Sort sparse page index when constructing DMatrix. (#7731) 2022-03-16 18:01:05 +08:00
Xiaochang WuJiaming YuanZhang Zhang
 		613ec36c5a Support building SimpleDMatrix from Arrow data format (#7512) 
* Integrate with Arrow C data API.
* Support Arrow dataset.
* Support Arrow table.

Co-authored-by: Xiaochang Wu <xiaochang.wu@intel.com>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
Co-authored-by: Zhang Zhang <zhang.zhang@intel.com>
 2022-03-15 13:25:19 +08:00
William Hicks 6b6849b001 Correct xgboost-config directory for inclusion in other projects (#7730) 2022-03-15 03:18:44 +08:00
Jiaming Yuan 98d6faefd6 Implement slope for Pseduo-Huber. (#7727) 
* Add objective and metric.
* Some refactoring for CPU/GPU dispatching using linalg module.
 2022-03-14 21:42:38 +08:00
Daniel ClausenandMarc Philipp 4dafb5fac8 [JVM-Packages] Add support for detecting musl-based Linux (#7624) 
Co-authored-by: Marc Philipp <marc@gradle.com>
 2022-03-14 00:37:27 +08:00
Haoming Chen 04fc575c0e Run tests in a temporary directory (#7723) 
Fix some tests to run in a temporary directory in case the root
directory is not writable. Note that most of tests are already
running in the temporary directory, so this PR just make them
consistent.
 2022-03-12 21:24:36 +08:00
Haoming Chen 55463b76c1 Initialize TreeUpdater ctx_ with nullptr (#7722) 2022-03-10 22:33:32 +08:00
Jiaming Yuan a62a3d991d [dask] prediction with categorical data. (#7708) 2022-03-10 00:21:48 +08:00
Pradipta Ghosh 68b6d6bbe2 Fix for Feature shape mismatch error (#7715) 2022-03-03 21:36:29 +08:00
Cheng Li a92e0f6240 multi groups in the constraints (#7711) 2022-03-01 18:10:15 +08:00
Jiaming Yuan 1d468e20a4 Optimize GPU evaluation function for categorical data. (#7705) 
* Use transform and cache.
 2022-02-28 17:46:29 +08:00
Jiaming Yuan 18a4af63aa Update documents and tests. (#7659) 
* Revise documents after recent refactoring and cat support.
* Add tests for behavior of max_depth and max_leaves.
 2022-02-26 03:57:47 +08:00
Jiaming Yuan 5eed2990ad Fix file descriptor leak. (#7704) 2022-02-25 17:49:33 +08:00
Philip Hyunsu Cho 1b25dd59f9 Use CUDA 11 in clang-tidy (#7701) 
* Show command args when clang-tidy fails

* Add option to specify CUDA args

* Use clang-tidy 11

* [CI] Use CUDA 11
 2022-02-24 15:15:07 -08:00
Jiaming Yuan 83a66b4994 Support categorical data for hist. (#7695) 
* Extract partitioner from hist.
* Implement categorical data support by passing the gradient index directly into the partitioner.
* Organize/update document.
* Remove code for negative hessian.
 2022-02-25 03:47:14 +08:00
Jiaming Yuan f60d95b0ba [R] Construct booster object in load.raw. (#7686) 2022-02-24 10:06:18 +08:00
Bobby Wang 89aa8ddf52 [jvm-packages] fix the prediction issue for multi:softmax (#7694) 2022-02-24 01:09:45 +08:00
Jiaming Yuan 6762c45494 Small cleanup to gradient index and hist. (#7668) 
* Code comments.
* Const accessor to index.
* Remove some weird variables in the `Index` class.
* Simplify the `MemStackAllocator`.
 2022-02-23 11:37:21 +08:00
Jiaming Yuan 49c74a5369 Update R package description. (#7691) 
* Change role.
* Remove cmake file when building the package.
 2022-02-23 08:36:37 +08:00
Bobby Wang e3e6de5ed9 [jvm-packages] unify the set features API (#7692) 
xgboost4j-spark provides 2 sets of API for setting features, one for CPU, another for GPU, which may cause confusion.

This PR removes the GPU API and adds an override CPU function setFeaturesCol to accept Array[String] parameters.
 2022-02-23 03:37:25 +08:00