* Use array interface for CSC matrix.
Use array interface for CSC matrix and align the interface with CSR and dense.
- Fix nthread issue in the R package DMatrix.
- Unify the behavior of handling `missing` with other inputs.
- Unify the behavior of handling `missing` around R, Python, Java, and Scala DMatrix.
- Expose `num_non_missing` to the JVM interface.
- Deprecate old CSR and CSC constructors.
This PR removes auto-detection of MUSL-based Linux systems in favor of system properties the user can set to configure a specific path for a native library.
Following classes are added to support dataframe in java binding:
- `Column` is an abstract type for a single column in tabular data.
- `ColumnBatch` is an abstract type for dataframe.
- `CuDFColumn` is an implementaiton of `Column` that consume cuDF column
- `CudfColumnBatch` is an implementation of `ColumnBatch` that consumes cuDF dataframe.
- `DeviceQuantileDMatrix` is the interface for quantized data.
The Java implementation mimics the Python interface and uses `__cuda_array_interface__` protocol for memory indexing. One difference is on JVM package, the data batch is staged on the host as java iterators cannot be reset.
Co-authored-by: jiamingy <jm.yuan@outlook.com>
Fix bug introduced in 17913713b554d820a8ce94226d854b4a5f1d8bbc (allow loading from byte array)
When loading model from stream, only last buffer read from the input stream is used to construct the model.
This may work for models smaller than 1 MiB (if you are lucky enough to read the whole model at once), but will always fail if the model is larger.
* Add `XGBOOST_RABIT_TRACKER_IP_FOR_TEST` to set rabit tracker IP
* change spark and rabit tracker IP to 127.0.0.1on GitHub Action.
Co-authored-by: fis <jm.yuan@outlook.com>
* Add ability to load booster direct from byte array
* fix compiler error
* move InputStream to byte-buffer conversion
- move it from Booster to XGBoost facade class
* [java] extending the library loader to use both OS and CPU architecture.
* Simplifying create_jni.py's architecture detection.
* Tidying up the architecture detection in create_jni.py
* Add getNumFeature to the Java API
* Add getNumFeature to the Scala API
* Add unit tests for getNumFeature
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
* [jvm-packages] add gpu_hist tree method
* change updater hist to grow_quantile_histmaker
* add gpu scheduling
* pass correct parameters to xgboost library
* remove debug info
* add use.cuda for pom
* add CI for gpu_hist for jvm
* add gpu unit tests
* use gpu node to build jvm
* use nvidia-docker
* Add CLI interface to create_jni.py using argparse
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
* fix type error
* Validate number of features.
* resolve comments
* add feature size for LabelPoint and DataBatch
* pass the feature size to native
* move feature size validating tests into a separate suite
* resolve comments
Co-authored-by: fis <jm.yuan@outlook.com>
* Fix syncing DMatrix columns.
* notes for tree method.
* Enable feature validation for all interfaces except for jvm.
* Better tests for boosting from predictions.
* Disable validation on JVM.
* Add BigDenseMatrix
* ability to create DMatrix with bigger than Integer.MAX_VALUE size arrays
* uses sun.misc.Unsafe
* make DMatrix test work from a jar as well
* Add public group getter for java and scala
* Remove unnecessary param from javadoc
* Fix typo
* Fix another typo
* Add semicolon
* Fix javadoc return statement
* Fix missing return statement
* Add a unit test
* bump scala to 2.12 which requires java 8 and also newer flink and akka
* put scala version in artifactId
* fix appveyor
* fix for scaladoc issue that looks like https://github.com/scala/bug/issues/10509
* fix ci_build
* update versions in generate_pom.py
* fix generate_pom.py
* apache does not have a download for spark 2.4.3 distro using scala 2.12 yet, so for now i use a tgz i put on s3
* Upload spark-2.4.3-bin-scala2.12-hadoop2.7.tgz to our own S3
* Update Dockerfile.jvm_cross
* Update Dockerfile.jvm_cross
* fix the nan and non-zero missing value handling
* fix nan handling part
* add missing value
* Update MissingValueHandlingSuite.scala
* Update MissingValueHandlingSuite.scala
* stylistic fix
The old NativeLibLoader had a short-circuit load path which modified
java.library.path and attempted to load the xgboost library from outside
the jar first, falling back to loading the library from inside the jar.
This path is a no-op every time when using XGBoost outside of it's
source tree. Additionally it triggers an illegal reflective access
warning in the module system in 9, 10, and 11.
On Java 12 the ClassLoader fields are not accessible via reflection
(separately from the illegal reflective acces warning), and so it fails
in a way that isn't caught by the code which falls back to loading the
library from inside the jar.
This commit removes that code path and always loads the xgboost library
from inside the jar file as it's a valid technique across multiple JVM
implementations and works with all versions of Java.
* Make train in xgboost4j respect print params
Previously no setting in params argument of Booster::train would prevent
the Rabit.trackerPrint call. This can fill up a lot of screen space in
the case that many folds are being trained.
* Setting "silent" in this map to "true", "True", a non-zero integer, or
a string that can be parsed to such an int will prevent printing.
* Setting "verbose_eval" to "False" or "false" will prevent printing.
* Setting "verbose_eval" to an int (or a String parseable to an int) n
will result in printing every n steps, or no printing is n is zero.
This is to match the python behaviour described here:
https://www.kaggle.com/c/rossmann-store-sales/discussion/17499
* Fixed 'slient' typo in xgboost4j test
* private access on two methods
* Fix early stop with xgboost4j-spark
* Update XGBoost.java
* Update XGBoost.java
* Update XGBoost.java
To use -Float.MAX_VALUE as the lower bound, in case there is positive metric.
* Only update best score if the current score is better (no update when equal)
* Update xgboost-spark tutorial to fix early stopping docs.
* Updates to Booster to support other feature importances
* Add returns for Java methods
* Pass Scala style checks
* Pass Java style checks
* Fix indents
* Use class instead of enum
* Return map string double
* A no longer broken build, thanks to mvn package local build
* Add a unit test to increase code coverage back
* Address code review on main code
* Add more unit tests for different feature importance scores
* Address more CR
