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202 Commits

Author SHA1 Message Date
Jiaming Yuan
230010d9a0
Cleanup set info. (#10139) 
- Use the array interface internally.
- Deprecate `XGDMatrixSetDenseInfo`.
- Deprecate `XGDMatrixSetUIntInfo`.
- Move the handling of `DataType` into the deprecated C function.

---------

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2024-03-26 23:26:24 +08:00
Philip Hyunsu Cho
1168a68872
[jvm-packages] Update release scripts (#9983) 
* [jvm-packages] Add Scala version suffix to xgboost-jvm package (#9776)

* Update JVM script (#9714)

* Revamp pom.xml

* Update instructions in prepare_jvm_release.py

* Fix formatting

* [jvm-packages] Fix POM for xgboost-jvm metapackage (#9893)

* [jvm-packages] Fix POM for xgboost-jvm metapackage

* Add script for updating the Scala version

* Update change_scala_version.py to also change scala.version property (#9897)

* Remove 'release-cpu-only' profile

* Remove scala-2.13 profile; enable gpu package for Scala 2.13
 2024-01-12 10:37:55 -08:00
Jiaming Yuan
3976455af9
[jvm-packages] Use UBJ for checkpoints. (#9954) 2024-01-08 13:26:12 +08:00
Jiaming Yuan
38dd91f491
Save model in ubj as the default. (#9947) 2024-01-05 17:53:36 +08:00
Jiaming Yuan
34a2616696
[jvm-packages] Update dependencies. (#9809) 
- scalatest: 3.2.17
- maven-checkstyle-plugin: 3.3.1
- maven-surefire-plugin: 3.2.2
- maven-project-info-reports-plugin: 3.5.0
- maven-javadoc-plugin: 3.6.2
 2023-11-27 20:09:25 +08:00
Jiaming Yuan
c75a3bc0a9
[breaking] [jvm-packages] Remove rabit check point. (#9599) 
- Add `numBoostedRound` to jvm packages
- Remove rabit checkpoint version.
- Change the starting version of training continuation in JVM [breaking].
- Redefine the checkpoint version policy in jvm package. [breaking]
- Rename the Python check point callback parameter. [breaking]
- Unifies the checkpoint policy between Python and JVM.
 2023-09-26 18:06:34 +08:00
Jon Yoquinto
d05ea589fb
Allow JVM-Package to access inplace predict method (#9167) 
---------

Co-authored-by: Stephan T. Lavavej <stl@nuwen.net>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
Co-authored-by: Joe <25804777+ByteSizedJoe@users.noreply.github.com>
 2023-09-12 07:29:51 +08:00
Jiaming Yuan
be6a552956
[R] Support multi-class custom objective. (#9526) 2023-08-29 08:27:13 +08:00
Jiaming Yuan
972730cde0
Use matrix for gradient. (#9508) 
- Use the `linalg::Matrix` for storing gradients.
- New API for the custom objective.
- Custom objective for multi-class/multi-target is now required to return the correct shape.
- Custom objective for Python can accept arrays with any strides. (row-major, column-major)
 2023-08-24 05:29:52 +08:00
Jiaming Yuan
58530b1bc4
Bump version to 2.1. (#9498) 2023-08-18 01:04:04 +08:00
Boris
8463107013
Updated versions. Reorganised dependencies. (#9479) 2023-08-14 14:28:28 -07:00
Bobby Wang
8f0efb4ab3
[jvm-packages] automatically set the max/min direction for best score (#9404) 2023-07-27 11:09:55 +08:00
Jiaming Yuan
f4fb2be101
[jvm-packages] Add the new device parameter. (#9385) 2023-07-17 18:40:39 +08:00
jinmfeng001
a1367ea1f8
Set feature_names and feature_types in jvm-packages (#9364) 
* 1. Add parameters to set feature names and feature types
2. Save feature names and feature types to native json model

* Change serialization and deserialization format to ubj.
 2023-07-12 15:18:46 +08:00
Boris
a01df102c9
Scala 2.13 support. (#9099) 
1. Updated the test logic
2. Added smoke tests for Spark examples.
3. Added integration tests for Spark with Scala 2.13
 2023-05-27 19:34:02 +08:00
dependabot[bot]
5d99b441d5
Bump scalatest_2.12 from 3.2.15 to 3.2.16 in /jvm-packages/xgboost4j (#9160) 
Bumps [scalatest_2.12](https://github.com/scalatest/scalatest) from 3.2.15 to 3.2.16.
- [Release notes](https://github.com/scalatest/scalatest/releases)
- [Commits](https://github.com/scalatest/scalatest/compare/release-3.2.15...release-3.2.16)

---
updated-dependencies:
- dependency-name: org.scalatest:scalatest_2.12
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-05-24 09:09:25 +08:00
Jiaming Yuan
1f9a57d17b
[Breaking] Require format to be specified in input URI. (#9077) 
Previously, we use `libsvm` as default when format is not specified. However, the dmlc
data parser is not particularly robust against errors, and the most common type of error
is undefined format.

Along with which, we will recommend users to use other data loader instead. We will
continue the maintenance of the parsers as it's currently used for many internal tests
including federated learning.
 2023-04-28 19:45:15 +08:00
Bobby Wang
d237378452
[jvm-packages] Clean up the dependencies after removing scala versioned tracker (#9078) 2023-04-24 17:49:08 +08:00
Emil Ejbyfeldt
a84a1fde02
[jvm-packages] Update scalatest to 3.2.15 (#8925) 
---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2023-04-20 22:16:56 +08:00
Jiaming Yuan
564df59204
[breaking] [jvm-packages] Remove scala-implemented tracker. (#9045) 2023-04-20 16:29:35 +08:00
dependabot[bot]
90645c4957
Bump maven-resources-plugin from 3.3.0 to 3.3.1 in /jvm-packages (#8980) 
Bumps [maven-resources-plugin](https://github.com/apache/maven-resources-plugin) from 3.3.0 to 3.3.1.
- [Release notes](https://github.com/apache/maven-resources-plugin/releases)
- [Commits](https://github.com/apache/maven-resources-plugin/compare/maven-resources-plugin-3.3.0...maven-resources-plugin-3.3.1)

---
updated-dependencies:
- dependency-name: org.apache.maven.plugins:maven-resources-plugin
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-03-27 16:03:45 +08:00
Philip Hyunsu Cho
36263dd109
[jvm-packages] Use akka 2.6 (#8920) 2023-03-16 20:06:42 -07:00
dependabot[bot]
d62daa0b32
Bump maven-javadoc-plugin from 3.4.1 to 3.5.0 in /jvm-packages (#8814) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 3.4.1 to 3.5.0.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-3.4.1...maven-javadoc-plugin-3.5.0)

---
updated-dependencies:
- dependency-name: org.apache.maven.plugins:maven-javadoc-plugin
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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 2023-02-16 23:16:11 +08:00
Jiaming Yuan
c1786849e3
Use array interface for CSC matrix. (#8672) 
* Use array interface for CSC matrix.

Use array interface for CSC matrix and align the interface with CSR and dense.

- Fix nthread issue in the R package DMatrix.
- Unify the behavior of handling `missing` with other inputs.
- Unify the behavior of handling `missing` around R, Python, Java, and Scala DMatrix.
- Expose `num_non_missing` to the JVM interface.
- Deprecate old CSR and CSC constructors.
 2023-02-05 01:59:46 +08:00
dependabot[bot]
0c1769b3a5
Bump maven-javadoc-plugin in /jvm-packages/xgboost4j (#8534) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 2.10.3 to 3.4.1.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-2.10.3...maven-javadoc-plugin-3.4.1)

---
updated-dependencies:
- dependency-name: org.apache.maven.plugins:maven-javadoc-plugin
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-12-06 02:30:46 +08:00
Philip Hyunsu Cho
42c5ee5588
[jvm-packages] Bump version of akka packages (#8524) 2022-12-05 22:45:00 +08:00
Bobby Wang
f1e9bbcee5
[breakinig] [jvm-packages] change DeviceQuantileDmatrix into QuantileDMatrix (#8461) 2022-12-05 12:23:21 +08:00
dependabot[bot]
c0609b98f1
Bump exec-maven-plugin from 1.6.0 to 3.1.0 in /jvm-packages/xgboost4j (#8518) 
Bumps [exec-maven-plugin](https://github.com/mojohaus/exec-maven-plugin) from 1.6.0 to 3.1.0.
- [Release notes](https://github.com/mojohaus/exec-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/exec-maven-plugin/compare/exec-maven-plugin-1.6.0...exec-maven-plugin-3.1.0)

---
updated-dependencies:
- dependency-name: org.codehaus.mojo:exec-maven-plugin
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-12-02 17:24:22 -08:00
dependabot[bot]
fcafd3a777
Bump maven-jar-plugin from 3.0.2 to 3.3.0 in /jvm-packages (#8506) 
Bumps [maven-jar-plugin](https://github.com/apache/maven-jar-plugin) from 3.0.2 to 3.3.0.
- [Release notes](https://github.com/apache/maven-jar-plugin/releases)
- [Commits](https://github.com/apache/maven-jar-plugin/compare/maven-jar-plugin-3.0.2...maven-jar-plugin-3.3.0)

---
updated-dependencies:
- dependency-name: org.apache.maven.plugins:maven-jar-plugin
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-12-02 17:21:01 -08:00
dependabot[bot]
b23e97f8b0
Bump maven-resources-plugin from 3.1.0 to 3.3.0 in /jvm-packages (#8504) 
Bumps [maven-resources-plugin](https://github.com/apache/maven-resources-plugin) from 3.1.0 to 3.3.0.
- [Release notes](https://github.com/apache/maven-resources-plugin/releases)
- [Commits](https://github.com/apache/maven-resources-plugin/compare/maven-resources-plugin-3.1.0...maven-resources-plugin-3.3.0)

---
updated-dependencies:
- dependency-name: org.apache.maven.plugins:maven-resources-plugin
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-12-02 17:20:37 -08:00
Jiaming Yuan
f73520bfff
Bump development version to 2.0. (#8390) 2022-10-28 15:21:19 +08:00
Rong Ou
668b8a0ea4
[Breaking] Switch from rabit to the collective communicator (#8257) 
* Switch from rabit to the collective communicator

* fix size_t specialization

* really fix size_t

* try again

* add include

* more include

* fix lint errors

* remove rabit includes

* fix pylint error

* return dict from communicator context

* fix communicator shutdown

* fix dask test

* reset communicator mocklist

* fix distributed tests

* do not save device communicator

* fix jvm gpu tests

* add python test for federated communicator

* Update gputreeshap submodule

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-10-05 14:39:01 -08:00
Jiaming Yuan
f835368bcf
Mark next release as 1.7 instead of 2.0 (#8281) 2022-09-28 14:33:37 +08:00
Rong Ou
7d43e74e71
JNI wrapper for the collective communicator (#8242) 2022-09-21 04:20:25 +08:00
Jiaming Yuan
bb47fd8c49
[jvm-packages] Change log level for tracker message. (#7968) 2022-06-09 18:15:08 +08:00
Bobby Wang
78694405a6
[jvm-packages] add jni for setting feature name and type (#7966) 2022-06-03 11:09:48 +08:00
Yang Jiandan
27c66f12d1
set log level as ERROR for trackerProcess has some stderr output (#7952) 2022-05-31 22:54:38 +08:00
Bobby Wang
6275cdc486
[jvm-packages] add format option when saving a model (#7940) 2022-05-30 15:49:59 +08:00
Daniel Clausen
755d9d4609
[JVM-Packages] Auto-detection of MUSL is replaced by system properties (#7921) 
This PR removes auto-detection of MUSL-based Linux systems in favor of system properties the user can set to configure a specific path for a native library.
 2022-05-26 10:53:15 +08:00
Michael Allman
f7db16add1
Ignore all Java exceptions when looking for Linux musl support (#7844) 2022-04-28 15:44:30 +08:00
Bobby Wang
2d83b2ad8f
[jvm-packages] add hostIp and python exec for rabit tracker (#7808) 2022-04-15 16:28:43 +08:00
Jiaming Yuan
522636cb52
Bump version. (#7769) 2022-03-31 06:33:22 +08:00
Daniel Clausen
4dafb5fac8
[JVM-Packages] Add support for detecting musl-based Linux (#7624) 
Co-authored-by: Marc Philipp <marc@gradle.com>
 2022-03-14 00:37:27 +08:00
Jiaming Yuan
ac7a36367c
[jvm-packages] Implement new save_raw in jvm-packages. (#7570) 
* New `toByteArray` that accepts a parameter for format.
 2022-01-19 16:00:14 +08:00
Jiaming Yuan
ed95e77752
[jvm-packages] Update JNI header. (#7550) 2022-01-10 14:59:40 +08:00
Bobby Wang
e8c1eb99e4
[jvm-package] Clean up the legacy gpu support tests (#7523) 2021-12-21 09:15:51 +08:00
Bobby Wang
24be04e848
[jvm-packages] Add DeviceQuantileDMatrix to Scala binding (#7459) 2021-11-24 20:23:18 +08:00
nicovdijk
74bab6e504
Control logging for early stopping using shouldPrint() (#7326) 2021-10-21 12:12:06 +08:00
Bobby Wang
4fd149b3a2
[jvm-packages] update checkstyle (#7335) 
* [jvm-packages] update scalastyle

1. bump scalastyle-maven-plugin and maven-checkstyle-plugin to latest
2. remove unused imports

* fix code style check
 2021-10-18 18:42:01 +08:00
Jiaming Yuan
f7caac2563
Bump version to 1.6.0 in master. (#7259) 2021-10-07 16:09:26 +08:00