Commit Graph
1136 Commits
Author SHA1 Message Date
Jiaming Yuan 804b2ac60f Expose DMatrix API for CUDA columnar and array. (#7217)
* Use JSON encoded configurations.
* Expose them into header file.
2021-09-09 17:55:25 +08:00
Jiaming Yuan b12e7f7edd Add noexcept to JSON objects. (#7205) 2021-09-07 13:56:48 +08:00
Jiaming Yuan 3a4f51f39f Avoid calling CUDA code on CPU for linear model. (#7154) 2021-09-01 10:45:31 +08:00
Jiaming Yuan ba69244a94 Restore the custom double atomic add. (#7198) 2021-08-28 18:30:42 +08:00
Jiaming YuanandAndy Adinets 7a1d67f9cb [breaking] Use integer atomic for GPU histogram. (#7180)
On GPU we use rouding factor to truncate the gradient for deterministic results. This PR changes the gradient representation to fixed point number with exponent aligned with rounding factor.

    [breaking] Drop non-deterministic histogram.
    Use fixed point for shared memory.

This PR is to improve the performance of GPU Hist. 

Co-authored-by: Andy Adinets <aadinets@nvidia.com>
2021-08-28 05:17:05 +08:00
Jiaming Yuan e7d7ab6bc3 Better error message for ncclUnhandledCudaError. (#7190) 2021-08-27 10:29:22 +08:00
Jiaming Yuan ee8d1f5ed8 Fix histogram truncation. (#7181)
* Fix truncation.

* Lint.

* lint.
2021-08-24 18:34:32 -07:00
Jiaming Yuan bf562bd33c Remove unused code. (#7175) 2021-08-18 14:02:19 +08:00
Jiaming Yuan 9600ca83f3 Remove synchronization in monitor. (#7164)
* Remove synchronization in monitor.

Calling rabit functions during destruction is flaky.

* Add xgboost prefix to nvtx marker.
2021-08-11 16:33:53 +08:00
Jiaming Yuan 149f209af6 Extract histogram builder from CPU Hist. (#7152)
* Extract the CPU histogram builder.
* Fix tests.
* Reduce number of histograms being built.
2021-08-09 21:15:21 +08:00
Philip Hyunsu Cho 336af4f974 Work around a segfault observed in SparsePage::Push() (#7161)
* Work around a segfault observed in SparsePage::Push()

* Revert "Work around a segfault observed in SparsePage::Push()"

This reverts commit 30934844d00908750a5442082eb4769b1489f6a9.

* Don't call vector::resize() inside OpenMP block

* Set GITHUB_PAT env var to fix R tests

* Use built-in GITHUB_TOKEN
2021-08-08 02:12:30 -07:00
Jiaming Yuan 8a84be37b8 Pass scikit learn estimator checks for regressor. (#7130)
* Check data shape.
* Check labels.
2021-08-03 18:58:20 +08:00
Jiaming Yuan d080b5a953 Fix model slicing. (#7149)
* Use correct pointer.
* Remove best_iteration/best_score.
2021-08-03 11:51:56 +08:00
Robert Maynard 1a75f43304 Allow compilation with nvcc 11.4 (#7131)
* Use type aliases for discard iterators

* update to include host_vector as thrust 1.12 doesn't bring it in as a side-effect

* cub::DispatchRadixSort requires signed offset types
2021-07-27 20:05:33 +08:00
Taewoo KimandTaewoo Kim 41e882f80b Check input value is duplicated when quantile queue is full (#7091)
Co-authored-by: Taewoo Kim <taewoo@layer6.com>
2021-07-23 03:07:01 +08:00
ShvetsKSandSHVETS, KIRILL caa9e527dd Remove extra sync for dense data (#7120)
Co-authored-by: SHVETS, KIRILL <kirill.shvets@intel.com>
2021-07-22 19:02:31 +08:00
Jiaming Yuan e6088366df Export Python Interface for external memory. (#7070)
* Add Python iterator interface.
* Add tests.
* Add demo.
* Add documents.
* Handle empty dataset.
2021-07-22 15:15:53 +08:00
farfarawayzyt e64ee6592f fix typo in src/common/hist.cc BuildHistKernel (#7116) 2021-07-21 19:53:05 +08:00
farfarawayzytandYuntian Zhang d7c14496d2 fix typo in arguments of PartitionBuilder::Init (#7113)
Co-authored-by: Yuntian Zhang <zhangyt@lamda.nju.edu.cn>
2021-07-16 15:46:22 +08:00
Jiaming Yuan bd1f3a38f0 Rewrite sparse dmatrix using callbacks. (#7092)
- Reduce dependency on dmlc parsers and provide an interface for users to load data by themselves.
- Remove use of threaded iterator and IO queue.
- Remove `page_size`.
- Make sure the number of pages in memory is bounded.
- Make sure the cache can not be violated.
- Provide an interface for internal algorithms to process data asynchronously.
2021-07-16 12:33:31 +08:00
Jiaming Yuan abec3dbf6d Fix thread safety of softmax prediction. (#7104) 2021-07-16 02:06:55 +08:00
Jiaming Yuan 345796825f Optional find dependency in installed cmake config. (#7099)
* Find dependency only when xgboost is built as static library.
* Resolve msvc warning.
* Add test for linking shared library.
2021-07-11 17:20:55 +08:00
Jiaming Yuan 77f6cf2d13 Support hessian in host sketch container. (#7081)
Prepare for migrating approx onto hist's codebase.
2021-07-08 16:33:58 +08:00
Jiaming Yuan 84d359efb8 Support host data in proxy DMatrix. (#7087) 2021-07-08 11:35:48 +08:00
Jiaming Yuan 5d7cdf2e36 [Breaking] Rename Quantile DMatrix C API. (#7082)
The role of ProxyDMatrix is going beyond what it was designed.  Now it's used by both
QuantileDeviceDMatrix and inplace prediction.  After the refactoring of sparse DMatrix it
will also be used for external memory.  Renaming the C API to extract it from
QuantileDeviceDMatrix.
2021-07-08 11:34:14 +08:00
Jiaming Yuan c766f143ab Refactor external memory formats. (#7089)
* Save base_rowid.
* Return write size.
* Remove unused function.
2021-07-08 04:04:51 +08:00
Jiaming Yuan 689eb8f620 Check external memory support for exact tree method. (#7088) 2021-07-08 02:12:57 +08:00
Jiaming Yuan 615ab2b03e Extract evaluate splits from CPU hist. (#7079)
Other than modularizing the split evaluation function, this PR also removes some more functions including `InitNewNodes` and `BuildNodeStats` among some other unused variables.  Also, scattered code like setting leaf weights is grouped into the split evaluator and `NodeEntry` is simplified and made private.  Another subtle difference with the original implementation is that the modified code doesn't call `tree[nidx].Parent()` to traversal upward.
2021-07-07 15:16:25 +08:00
Jiaming Yuan 116d711815 Make SimpleDMatrix ctor reusable. (#7075) 2021-07-06 13:38:24 +08:00
Jiaming Yuan d7e1fa7664 Fix feature names and types in output model slice. (#7078) 2021-07-06 11:47:49 +08:00
Jiaming Yuan 1cd20efe68 Move GHistIndex into DMatrix. (#7064) 2021-07-01 00:44:49 +08:00
Jiaming Yuan 1c8fdf2218 Remove use of device_idx in dh::LaunchN. (#7063)
It's an unused parameter, removing it can make the CI log more readable.
2021-06-29 11:37:26 +08:00
Jiaming Yuan 8fa32fdda2 Implement categorical data support for SHAP. (#7053)
* Add CPU implementation.
* Update GPUTreeSHAP.
* Add GPU implementation by defining custom split condition.
2021-06-25 19:02:46 +08:00
Jiaming YuanandPhilip Hyunsu Cho 663136aa08 Implement feature score for linear model. (#7048)
* Add feature score support for linear model.
* Port R interface to the new implementation.
* Add linear model support in Python.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2021-06-25 14:34:02 +08:00
Jiaming Yuan bbfffb444d Fix race condition in CPU shap. (#7050) 2021-06-21 10:03:15 +08:00
Jiaming Yuan 29f8fd6fee Support categorical split in tree model dump. (#7036) 2021-06-18 16:46:20 +08:00
Jiaming Yuan 7968c0d051 Test on s390x. (#7038)
* Fix && remove unused parameter.
2021-06-18 14:55:08 +08:00
Jiaming Yuan 86715e4cd4 Support categorical data for dask functional interface and DQM. (#7043)
* Support categorical data for dask functional interface and DQM.

* Implement categorical data support for GPU GK-merge.
* Add support for dask functional interface.
* Add support for DQM.

* Get newer cupy.
2021-06-18 13:06:52 +08:00
Jiaming Yuan 7dd29ffd47 Implement feature score in GBTree. (#7041)
* Categorical data support.
* Eliminate text parsing during feature score computation.
2021-06-18 11:53:16 +08:00
Jiaming Yuan 5c2d7a18c9 Parallel model dump for trees. (#7040) 2021-06-15 14:08:26 +08:00
ShvetsKSandKirill Shvets 2567404ab6 Simplify sparse and dense CPU hist kernels (#7029)
* Simplify sparse and dense kernels
* Extract row partitioner.

Co-authored-by: Kirill Shvets <kirill.shvets@intel.com>
2021-06-11 18:26:30 +08:00
Jiaming Yuan b56614e9b8 [R] Use new predict function. (#6819)
* Call new C prediction API.
* Add `strict_shape`.
* Add `iterationrange`.
* Update document.
2021-06-11 13:03:29 +08:00
Jiaming YuanandShvets Kirill f79cc4a7a4 Implement categorical prediction for CPU and GPU predict leaf. (#7001)
* Categorical prediction with CPU predictor and GPU predict leaf.

* Implement categorical prediction for CPU prediction.
* Implement categorical prediction for GPU predict leaf.
* Refactor the prediction functions to have a unified get next node function.

Co-authored-by: Shvets Kirill <kirill.shvets@intel.com>
2021-06-11 10:11:45 +08:00
Jiaming Yuan 72f9daf9b6 Fix gpu_id with custom objective. (#7015) 2021-06-09 14:51:17 +08:00
TP Boudreau bd2ca543c4 Fix BinarySearchBin() argument types (#7026) 2021-06-08 19:05:46 +08:00
ShvetsKSandKirill Shvets 5cdaac00c1 Remove feature grouping (#7018)
Co-authored-by: Kirill Shvets <kirill.shvets@intel.com>
2021-06-03 04:35:26 +08:00
ShvetsKSandKirill Shvets 57c732655e Merge lossgude and depthwise strategies for CPU hist (#7007)
* fix java/scala test: max depth is also valid parameter for lossguide

Co-authored-by: Kirill Shvets <kirill.shvets@intel.com>
2021-06-03 01:49:43 +08:00
Jiaming Yuan ee4f51a631 Support for all primitive types from array. (#7003)
* Change C API name.
* Test for all primitive types from array.
* Add native support for CPU 128 float.
* Convert boolean and float16 in Python.

* Fix dask version for now.
2021-06-01 08:34:48 +08:00
Jiaming Yuan 816b789bf0 Add predictor to skl constructor. (#7000) 2021-05-29 04:52:56 +08:00
ShvetsKSandKirill Shvets 55b823b27d Reduce 'InitSampling' complexity and set gradients to zero (#6922)
Co-authored-by: Kirill Shvets <kirill.shvets@intel.com>
2021-05-29 04:52:23 +08:00