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Author SHA1 Message Date
Jiaming Yuan
17fd3f55e9 Optimize adapter element counting on GPU. (#9209) 
- Implement a simple `IterSpan` for passing iterators with size.
- Use shared memory for column size counts.
- Use one thread for each sample in row count to reduce atomic operations.
 2023-05-30 23:28:43 +08:00
Jiaming Yuan
097f11b6e0 Support CUDA f16 without transformation. (#9207) 
- Support f16 from cupy.
- Include CUDA header explicitly.
- Cleanup cmake nvtx support.
 2023-05-30 20:54:31 +08:00
dependabot[bot]
6f83d9c69a Bump maven-project-info-reports-plugin in /jvm-packages (#9219) 
Bumps [maven-project-info-reports-plugin](https://github.com/apache/maven-project-info-reports-plugin) from 3.4.3 to 3.4.4.
- [Commits](https://github.com/apache/maven-project-info-reports-plugin/compare/maven-project-info-reports-plugin-3.4.3...maven-project-info-reports-plugin-3.4.4)

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 2023-05-30 19:10:07 +08:00
Jiaming Yuan
ae7450ce54 Skip optional synchronization in thrust. (#9212) 2023-05-30 17:23:09 +08:00
Jean Lescut-Muller
ddec0f378c [doc] Show derivative of the custom objective (#9213) 
---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2023-05-30 04:07:12 +08:00
Bobby Wang
320323f533 [pyspark] add parameters in the ctor of all estimators. (#9202) 
---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2023-05-29 05:58:16 +08:00
Jiaming Yuan
03bc6e6427 Remove unused variables. (#9210) 
- remove used variables.
- Remove signed comparison warnings.
 2023-05-28 05:24:15 +08:00
dependabot[bot]
d563d6d8f4 Bump scala-collection-compat_2.12 from 2.9.0 to 2.10.0 in /jvm-packages (#9208) 
Bumps [scala-collection-compat_2.12](https://github.com/scala/scala-collection-compat) from 2.9.0 to 2.10.0.
- [Release notes](https://github.com/scala/scala-collection-compat/releases)
- [Commits](https://github.com/scala/scala-collection-compat/compare/v2.9.0...v2.10.0)

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 2023-05-28 00:22:28 +08:00
Boris
a01df102c9 Scala 2.13 support. (#9099) 
1. Updated the test logic
2. Added smoke tests for Spark examples.
3. Added integration tests for Spark with Scala 2.13
 2023-05-27 19:34:02 +08:00
Jiaming Yuan
8c174ef2d3 [CI] Update images that are not related to binary release. (#9205) 
* [CI] Update images that are not related to the binary release.

- Update clang-tidy, prefer tools from the Ubuntu repository.
- Update GPU image to 22.04.
- Small cleanup to the tidy script.
- Remove gpu_jvm, which seems to be unused.
 2023-05-27 17:40:46 +08:00
michael-gendy-mention-me
c5677a2b2c Remove type: ignore hints (#9197) 2023-05-27 07:48:28 +08:00
Jiaming Yuan
053aababd4 Avoid thrust logical operation. (#9199) 
Thrust implementation of `thrust::all_of/any_of/none_of` adopts an early stopping strategy
to bailout early by dividing the input into small batches. This is not ideal for data
validation as we expect all data to be valid. The strategy leads to excessive kernel
launches and stream synchronization.

* Use reduce from dh instead.
 2023-05-27 01:36:58 +08:00
dependabot[bot]
614f47c477 Bump flink-clients from 1.17.0 to 1.17.1 in /jvm-packages (#9203) 
Bumps [flink-clients](https://github.com/apache/flink) from 1.17.0 to 1.17.1.
- [Commits](https://github.com/apache/flink/compare/release-1.17.0...release-1.17.1)

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 2023-05-26 18:42:24 +08:00
Rong Ou
5b69534b43 Support column split in multi-target hist (#9171) 2023-05-26 16:56:05 +08:00
Rong Ou
acd363033e Fix running MGPU gtests (#9200) 2023-05-26 05:26:38 +08:00
dependabot[bot]
5d99b441d5 Bump scalatest_2.12 from 3.2.15 to 3.2.16 in /jvm-packages/xgboost4j (#9160) 
Bumps [scalatest_2.12](https://github.com/scalatest/scalatest) from 3.2.15 to 3.2.16.
- [Release notes](https://github.com/scalatest/scalatest/releases)
- [Commits](https://github.com/scalatest/scalatest/compare/release-3.2.15...release-3.2.16)

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- dependency-name: org.scalatest:scalatest_2.12
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 2023-05-24 09:09:25 +08:00
dependabot[bot]
e38e94ba4d Bump rapids-4-spark_2.12 from 23.04.0 to 23.04.1 in /jvm-packages (#9158) 
Bumps rapids-4-spark_2.12 from 23.04.0 to 23.04.1.

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 2023-05-24 07:15:46 +08:00
dependabot[bot]
d6d83c818f Bump maven-assembly-plugin from 3.5.0 to 3.6.0 in /jvm-packages (#9163) 
Bumps [maven-assembly-plugin](https://github.com/apache/maven-assembly-plugin) from 3.5.0 to 3.6.0.
- [Commits](https://github.com/apache/maven-assembly-plugin/compare/maven-assembly-plugin-3.5.0...maven-assembly-plugin-3.6.0)

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 2023-05-23 13:56:12 -07:00
dependabot[bot]
22b0fc0992 Bump maven-source-plugin from 3.2.1 to 3.3.0 in /jvm-packages (#9184) 
Bumps [maven-source-plugin](https://github.com/apache/maven-source-plugin) from 3.2.1 to 3.3.0.
- [Commits](https://github.com/apache/maven-source-plugin/compare/maven-source-plugin-3.2.1...maven-source-plugin-3.3.0)

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 2023-05-24 03:29:44 +08:00
dependabot[bot]
e67a0b8599 Bump maven-checkstyle-plugin from 3.2.2 to 3.3.0 in /jvm-packages (#9192) 
Bumps [maven-checkstyle-plugin](https://github.com/apache/maven-checkstyle-plugin) from 3.2.2 to 3.3.0.
- [Commits](https://github.com/apache/maven-checkstyle-plugin/compare/maven-checkstyle-plugin-3.2.2...maven-checkstyle-plugin-3.3.0)

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 2023-05-24 01:43:47 +08:00
Jiaming Yuan
3913ff470f Import data lazily during tests. (#9176) 2023-05-23 03:58:31 +08:00
Bobby Wang
6274fba0a5 [pyspark] support tying (#9172) 2023-05-19 14:39:26 +08:00
Bobby Wang
caf326d508 [pyspark] Refactor and typing support for models (#9156) 2023-05-17 16:38:51 +08:00
Bobby Wang
cb370c4f7d [jvm] separate spark.version for cpu and gpu (#9166) 2023-05-17 07:12:20 +08:00
Stephan T. Lavavej
7375bd058b Fix IndexTransformIter. (#9155) 2023-05-12 21:25:54 +08:00
Stephan T. Lavavej
59edfdb315 Fix typo: _defined => defined (#9153) 2023-05-11 16:34:45 -07:00
Stephan T. Lavavej
779b82c098 Avoid redefining macros. (#9154) 2023-05-11 15:59:25 -07:00
Rong Ou
603f8ce2fa Support hist in the partition builder under column split (#9120) 2023-05-11 05:24:29 +08:00
Rong Ou
52311dcec9 Fix multi-threaded gtests (#9148) 2023-05-10 19:15:32 +08:00
Jiaming Yuan
e4129ed6ee [jvm-packages] Remove akka in tester. (#9149) 2023-05-10 14:10:58 +08:00
dependabot[bot]
2ab6660943 Bump maven-surefire-plugin in /jvm-packages/xgboost4j-spark (#9131) 
Bumps [maven-surefire-plugin](https://github.com/apache/maven-surefire) from 3.0.0 to 3.1.0.
- [Release notes](https://github.com/apache/maven-surefire/releases)
- [Commits](https://github.com/apache/maven-surefire/compare/surefire-3.0.0...surefire-3.1.0)

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 2023-05-10 12:21:36 +08:00
dependabot[bot]
d21e7e5f82 Bump maven-gpg-plugin from 3.0.1 to 3.1.0 in /jvm-packages (#9136) 
Bumps [maven-gpg-plugin](https://github.com/apache/maven-gpg-plugin) from 3.0.1 to 3.1.0.
- [Commits](https://github.com/apache/maven-gpg-plugin/compare/maven-gpg-plugin-3.0.1...maven-gpg-plugin-3.1.0)

---
updated-dependencies:
- dependency-name: org.apache.maven.plugins:maven-gpg-plugin
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2023-05-10 10:21:36 +08:00
Philip Hyunsu Cho
0cd4382d72 Fix config-settings handling in pip install (#9115) 
* Fix config_settings handling in pip install

* Fix formatting

* Fix flag use_system_libxgboost

* Add setuptools to doc requirements.txt

* Fix mypy
 2023-05-09 17:54:20 -07:00
Jiaming Yuan
09b44915e7 [doc] Replace recommonmark with myst-parser. (#9125) 2023-05-10 08:11:36 +08:00
Jiaming Yuan
85988a3178 Wait for data CUDA stream instead of sync. (#9144) 
---------

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2023-05-09 09:52:21 +08:00
Uriya Harpeness
a075aa24ba Move python tool configurations to pyproject.toml, and add the python 3.11 classifier. (#9112) 2023-05-06 02:59:06 +08:00
Jiaming Yuan
55968ed3fa Fix monotone constraints on CPU. (#9122) 2023-05-06 01:07:54 +08:00
Rong Ou
250b22dd22 Fix nvflare horizontal demo (#9124) 2023-05-05 16:48:22 +08:00
Jiaming Yuan
47b3cb6fb7 Remove unused parameters in RABIT. (#9108) 2023-05-05 05:26:24 +08:00
Philip Hyunsu Cho
07b2d5a26d Add useful links to pyproject.toml (#9114) 2023-05-02 12:47:15 -07:00
Jiaming Yuan
08ce495b5d Use Booster context in DMatrix. (#8896) 
- Pass context from booster to DMatrix.
- Use context instead of integer for `n_threads`.
- Check the consistency configuration for `max_bin`.
- Test for all combinations of initialization options.
 2023-04-28 21:47:14 +08:00
Jiaming Yuan
1f9a57d17b [Breaking] Require format to be specified in input URI. (#9077) 
Previously, we use `libsvm` as default when format is not specified. However, the dmlc
data parser is not particularly robust against errors, and the most common type of error
is undefined format.

Along with which, we will recommend users to use other data loader instead. We will
continue the maintenance of the parsers as it's currently used for many internal tests
including federated learning.
 2023-04-28 19:45:15 +08:00
Bobby Wang
e922004329 [doc] fix the cudf installation [skip ci] (#9106) 2023-04-28 19:43:58 +08:00
Jiaming Yuan
17ff471616 Optimize array interface input. (#9090) 2023-04-28 18:01:58 +08:00
Rong Ou
fb941262b4 Add demo for vertical federated learning (#9103) 2023-04-28 16:03:21 +08:00
Jiaming Yuan
e206b899ef Rework MAP and Pairwise for LTR. (#9075) 2023-04-28 02:39:12 +08:00
Jiaming Yuan
0e470ef606 Optimize prediction with QuantileDMatrix. (#9096) 
- Reduce overhead in `FVecDrop`.
- Reduce overhead caused by `HostVector()` calls.
 2023-04-28 00:51:41 +08:00
Jiaming Yuan
fa267ad093 [CI] Freeze R version to 4.2.0 with MSVC. (#9104) 2023-04-27 22:48:31 +08:00
Jiaming Yuan
96d3f8a6f3 [doc] Update document. (#9098) 
- Mention flink is still under construction.
- Update doxygen version.
- Fix warnings from doxygen about defgroup title and mismatched parameter name.
 2023-04-27 19:29:03 +08:00
Rong Ou
511d4996b5 Rely on gRPC to generate random port (#9102) 2023-04-27 09:48:26 +08:00