171 Commits

Author SHA1 Message Date
Jiaming Yuan
7e477a2adb
Fix data loading (#4862)
* Fix loading text data.
* Fix config regex.
* Try to explain the error better in exception.
* Update doc.
2019-10-22 12:33:14 -04:00
Jiaming Yuan
4771bb0d41
Catch exception in transform function omp context. (#4960) 2019-10-21 17:03:38 +08:00
Jiaming Yuan
31030a8d3a
Set correct file permission. (#4964) 2019-10-18 12:54:29 -04:00
Jiaming Yuan
ae536756ae
Add Model and Configurable interface. (#4945)
* Apply Configurable to objective functions.
* Apply Model to Learner and Regtree, gbm.
* Add Load/SaveConfig to objs.
* Refactor obj tests to use smart pointer.
* Dummy methods for Save/Load Model.
2019-10-18 01:56:02 -04:00
Rory Mitchell
60748b2071
Use heuristic to select histogram node, avoid rabit call (#4951) 2019-10-18 11:33:54 +13:00
Jiaming Yuan
b61d534472
Span: use size_t' for index_type, add front' and `back'. (#4935)
* Use `size_t' for index_type.  Add `front' and `back'.

* Remove a batch of `static_cast'.
2019-10-14 09:13:33 -04:00
Jiaming Yuan
3d46bd0fa5
Ignore columnar alignment requirement. (#4928)
* Better error message for wrong type.
* Fix stride size.
2019-10-13 06:41:43 -04:00
Oleksandr Pryimak
80977182c5 Use bundled gtest (#4900)
* Suggest to use gtest bundled with dmlc

* Use dmlc bundled gtest in all CI scripts

* Make clang-tidy to use dmlc embedded gtest
2019-10-09 16:26:19 -07:00
Jiaming Yuan
095de3bf5f
Export c++ headers in CMake installation. (#4897)
* Move get transpose into cc.

* Clean up headers in host device vector, remove thrust dependency.

* Move span and host device vector into public.

* Install c++ headers.

* Short notes for c and c++.

Co-Authored-By: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2019-10-06 23:53:09 -04:00
Jiaming Yuan
d30e63a0a5
Support feature names/types for cudf. (#4902)
* Implement most of the pandas procedure for cudf except for type conversion.
* Requires an array of interfaces in metainfo.
2019-09-29 15:07:51 -04:00
Rong Ou
562bb0ae31 remove device shards (#4867) 2019-09-25 13:15:46 +08:00
Jiaming Yuan
0b89cd1dfa
Support gamma in GPU_Hist. (#4874)
* Just prevent building the tree instead of using an explicit pruner.
2019-09-24 10:16:08 +08:00
Jiaming Yuan
57106a3459
Fix parsing empty json object. (#4868)
* Fix parsing empty json object.

* Better error message.
2019-09-18 03:31:46 -04:00
Jiaming Yuan
5374f52531
Complete cudf support. (#4850)
* Handles missing value.
* Accept all floating point and integer types.
* Move to cudf 9.0 API.
* Remove requirement on `null_count`.
* Arbitrary column types support.
2019-09-16 23:52:00 -04:00
Rong Ou
125bcec62e Move ellpack page construction into DMatrix (#4833) 2019-09-16 23:50:55 -04:00
Jiaming Yuan
a5f232feb8
Fix calling GPU predictor (#4836)
* Fix calling GPU predictor
2019-09-05 19:09:38 -04:00
Jiaming Yuan
c0fbeff0ab
Restrict access to cfg_ in gbm. (#4801)
* Restrict access to `cfg_` in gbm.

* Verify having correct updaters.

* Remove `grow_global_histmaker`

This updater is the same as `grow_histmaker`.  The former is not in our
document so we just remove it.
2019-09-02 00:43:19 -04:00
Rong Ou
733ed24dd9 further cleanup of single process multi-GPU code (#4810)
* use subspan in gpu predictor instead of copying
* Revise `HostDeviceVector`
2019-08-30 05:27:23 -04:00
Rong Ou
38ab79f889 Make HostDeviceVector single gpu only (#4773)
* Make HostDeviceVector single gpu only
2019-08-26 09:51:13 +12:00
Jiaming Yuan
9700776597 Cudf support. (#4745)
* Initial support for cudf integration.

* Add two C APIs for consuming data and metainfo.

* Add CopyFrom for SimpleCSRSource as a generic function to consume the data.

* Add FromDeviceColumnar for consuming device data.

* Add new MetaInfo::SetInfo for consuming label, weight etc.
2019-08-19 16:51:40 +12:00
Jiaming Yuan
ab357dd41c
Remove plugin, cuda related code in automake & autoconf files (#4789)
* Build plugin example with CMake.

* Remove plugin, cuda related code in automake & autoconf files.

* Fix typo in GPU doc.
2019-08-18 16:54:34 -04:00
Xu Xiao
ef9af33a00 [HOTFIX] distributed training with hist method (#4716)
* add parallel test for hist.EvalualiteSplit

* update test_openmp.py

* update test_openmp.py

* update test_openmp.py

* update test_openmp.py

* update test_openmp.py

* fix OMP schedule policy

* fix clang-tidy

* add logging: total_num_bins

* fix

* fix

* test

* replace guided OPENMP policy with static in updater_quantile_hist.cc
2019-08-13 11:27:29 -07:00
Rong Ou
c5b229632d [BREAKING] prevent multi-gpu usage (#4749)
* prevent multi-gpu usage

* fix distributed test

* combine gpu predictor tests

* set upper bound on n_gpus
2019-08-13 09:11:35 +12:00
Rong Ou
19f9fd5de9 remove the qids_ field in MetaInfo (#4744) 2019-08-08 10:01:59 +08:00
Bobby
3e2c472944 Fix model parameter recovery (#4738) 2019-08-07 02:32:10 -04:00
Rong Ou
851b5b3808 Remove gpu_exact tree method (#4742) 2019-08-07 11:43:20 +12:00
Jiaming Yuan
2a4df8e29f
Add Json integer, remove specialization. (#4739) 2019-08-06 03:10:49 -04:00
Jiaming Yuan
9c469b3844
Move bitfield into common. (#4737)
* Prepare for columnar format support.
2019-08-06 02:49:32 -04:00
Jiaming Yuan
4fe0d8203e
Specify version macro in CMake. (#4730)
* Specify version macro in CMake.

* Use `XGBOOST_DEFINITIONS` instead.
2019-08-04 06:04:04 -04:00
Rong Ou
6edddd7966 Refactor DMatrix to return batches of different page types (#4686)
* Use explicit template parameter for specifying page type.
2019-08-03 15:10:34 -04:00
Jiaming Yuan
d2e1e4d5b4
A simple Json implementation for future use. (#4708)
* A simple Json implementation for future use.
2019-07-29 21:17:27 -04:00
Jiaming Yuan
f0064c07ab
Refactor configuration [Part II]. (#4577)
* Refactor configuration [Part II].

* General changes:
** Remove `Init` methods to avoid ambiguity.
** Remove `Configure(std::map<>)` to avoid redundant copying and prepare for
   parameter validation. (`std::vector` is returned from `InitAllowUnknown`).
** Add name to tree updaters for easier debugging.

* Learner changes:
** Make `LearnerImpl` the only source of configuration.

    All configurations are stored and carried out by `LearnerImpl::Configure()`.

** Remove booster in C API.

    Originally kept for "compatibility reason", but did not state why.  So here
    we just remove it.

** Add a `metric_names_` field in `LearnerImpl`.
** Remove `LazyInit`.  Configuration will always be lazy.
** Run `Configure` before every iteration.

* Predictor changes:
** Allocate both cpu and gpu predictor.
** Remove cpu_predictor from gpu_predictor.

    `GBTree` is now used to dispatch the predictor.

** Remove some GPU Predictor tests.

* IO

No IO changes.  The binary model format stability is tested by comparing
hashing value of save models between two commits
2019-07-20 08:34:56 -04:00
Matvey Turkov
61f764946f fixed year to 2019 in conf.py, helpers.h and LICENSE (#4661) 2019-07-15 12:29:12 -04:00
sriramch
7a388cbf8b Modify caching allocator/vector and fix issues relating to inability to train large datasets (#4615) 2019-07-09 18:33:27 +12:00
Jiaming Yuan
d9a47794a5 Fix CPU hist init for sparse dataset. (#4625)
* Fix CPU hist init for sparse dataset.

* Implement sparse histogram cut.
* Allow empty features.

* Fix windows build, don't use sparse in distributed environment.

* Comments.

* Smaller threshold.

* Fix windows omp.

* Fix msvc lambda capture.

* Fix MSVC macro.

* Fix MSVC initialization list.

* Fix MSVC initialization list x2.

* Preserve categorical feature behavior.

* Rename matrix to sparse cuts.
* Reuse UseGroup.
* Check for categorical data when adding cut.

Co-Authored-By: Philip Hyunsu Cho <chohyu01@cs.washington.edu>

* Sanity check.

* Fix comments.

* Fix comment.
2019-07-04 16:27:03 -07:00
Philip Hyunsu Cho
96bf91725b
Support ndcg- and map- (#4635) 2019-07-03 22:51:48 -07:00
Jiaming Yuan
45876bf41b
Fix external memory for get column batches. (#4622)
* Fix external memory for get column batches.

This fixes two bugs:

* Use PushCSC for get column batches.
* Don't remove the created temporary directory before finishing test.

* Check all pages.
2019-06-30 09:56:49 +08:00
Rong Ou
63ec95623d fix gpu predictor when dmatrix is mismatched with model (#4613) 2019-06-28 11:03:02 +12:00
Egor Smirnov
4d6590be3c Optimize ‘hist’ for multi-core CPU (#4529)
* Initial performance optimizations for xgboost

* remove includes

* revert float->double

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* Check existence of _mm_prefetch and __builtin_prefetch

* Fix lint

* optimizations for CPU

* appling comments in review

* add some comments, code refactoring

* fixing issues in CI

* adding runtime checks

* remove 1 extra check

* remove extra checks in BuildHist

* remove checks

* add debug info

* added debug info

* revert changes

* added comments

* Apply suggestions from code review

Co-Authored-By: Philip Hyunsu Cho <chohyu01@cs.washington.edu>

* apply review comments

* Remove unused function CreateNewNodes()

* Add descriptive comment on node_idx variable in QuantileHistMaker::Builder::BuildHistsBatch()
2019-06-27 11:33:49 -07:00
Jiaming Yuan
8bdf15120a
Implement tree model dump with code generator. (#4602)
* Implement tree model dump with a code generator.

* Split up generators.
* Implement graphviz generator.
* Use pattern matching.

* [Breaking] Return a Source in `to_graphviz` instead of Digraph in Python package.


Co-Authored-By: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2019-06-26 15:20:44 +08:00
Rong Ou
6125521caf fix compiler warning (#4588) 2019-06-21 04:06:26 +08:00
Rory Mitchell
221e163185
Refactor out row partitioning logic from gpu_hist, introduce caching device vectors (#4554) 2019-06-20 18:24:09 +12:00
Jiaming Yuan
ae05948e32
Feature interaction for GPU Hist. (#4534)
* GPU hist Interaction Constraints.
* Duplicate related parameters.
* Add tests for CPU interaction constraint.
* Add better error reporting.
* Thorough tests.
2019-06-19 18:11:02 +08:00
sriramch
6757654337 Optimizations for quantisation on device (#4572)
* - do not create device vectors for the entire sparse page while computing histograms...
   - while creating the compressed histogram indices, the row vector is created for the entire
     sparse page batch. this is needless as we only process chunks at a time based on a slice
     of the total gpu memory
   - this pr will allocate only as much as required to store the ppropriate row indices and the entries

* - do not dereference row_ptrs once the device_vector has been created to elide host copies of those counts
   - instead, grab the entry counts directly from the sparsepage
2019-06-19 10:50:25 +12:00
sriramch
90f683b25b Set the appropriate device before freeing device memory... (#4566)
* - set the appropriate device before freeing device memory...
   - pr #4532 added a global memory tracker/logger to keep track of number of (de)allocations
     and peak memory usage on a per device basis.
   - this pr adds the appropriate check to make sure that the (de)allocation counts and memory usages
     makes sense for the device. since verbosity is typically increased on debug/non-retail builds.  
* - pre-create cub allocators and reuse them
   - create them once and not resize them dynamically. we need to ensure that these allocators
     are created and destroyed exactly once so that the appropriate device id's are set
2019-06-18 14:58:05 +12:00
Jiaming Yuan
c5719cc457
Offload some configurations into GBM. (#4553)
This is part 1 of refactoring configuration.

* Move tree heuristic configurations.
* Split up declarations and definitions for GBTree.
* Implement UseGPU in gbm.
2019-06-14 09:18:51 +08:00
sriramch
a2042b685a - training with external memory - part 2 of 2 (#4526)
* - training with external memory - part 2 of 2
   - when external memory support is enabled, building of histogram indices are
     done incrementally for every sparse page
   - the entire set of input data is divided across multiple gpu's and the relative
     row positions within each device is tracked when building the compressed histogram buffer
   - this was tested using a mortgage dataset containing ~ 670m rows before 4xt4's could be
     saturated
2019-06-12 09:52:56 +12:00
Jiaming Yuan
2f1319f273
Add rmsle metric and reg:squaredlogerror objective (#4541) 2019-06-11 05:48:27 +08:00
Rory Mitchell
9683fd433e
Overload device memory allocation (#4532)
* Group source files, include headers in source files

* Overload device memory allocation
2019-06-10 11:35:13 +12:00
Jiaming Yuan
da21ac0cc2
Fix tweedie metric string. (#4543) 2019-06-09 09:52:29 +08:00