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81 Commits

Author SHA1 Message Date
Jiaming Yuan
594371e35b
Fix CPP lint. (#8807) 2023-02-15 20:16:35 +08:00
Jiaming Yuan
e62167937b
[CI] Update action cache for jvm tests. (#8806) 2023-02-15 18:43:48 +08:00
Hamel Husain
16ef016ba7
[CI] Use bash -l {0} as the default in GitHub Actions (#8741) 2023-01-31 15:00:29 +08:00
Jiaming Yuan
badeff1d74
Init estimation for regression. (#8272) 2023-01-11 02:04:56 +08:00
James Lamb
dd72af2620
[CI] fix git errors related to directory ownership (#8628) 2023-01-01 16:05:44 -08:00
James Lamb
c7e82b5914
[R] enforce lintr checks (fixes #8012) (#8613) 2022-12-25 05:02:56 +08:00
James Lamb
05fc6f3ca9
[R] [ci] move linting code out of package (#8545) 2022-12-07 03:18:17 +08:00
Jiaming Yuan
d99bdd1b1e
[CI] Fix github action mismatched glibcxx. (#8551) 
* [CI] Fix github action mismatched glibcxx.

Split up the Linux test to use the toolchain from conda forge.
 2022-12-06 17:42:15 +08:00
Philip Hyunsu Cho
7c6f2346d3
[jvm-packages] Configure dependabot properly (#8507) 
* [jvm-packages] Configure dependabot properly

* Allow automatic updates for Scala and Spark within the same major version
 2022-12-01 16:26:47 -08:00
Philip Hyunsu Cho
9a98e79649
[jvm-packages] Set up dependabot (#8501) 2022-11-30 22:46:17 -08:00
Joyce
3b8a0e08f7
feat: use commit hash instead of version to actions workflows (#8460) 
Signed-off-by: Joyce Brum <joycebrum@google.com>

Signed-off-by: Joyce Brum <joycebrum@google.com>
 2022-11-17 22:04:11 +08:00
Jiaming Yuan
a83748eb45
[CI] Revise R tests. (#8430) 
- Use the standard package check (check on the tarball instead of the source tree).
- Run commands in parallel.
- Cleanup dependencies installation.
- Replace makefile.
- Documentation.
- Test using the image from rhub.
 2022-11-09 09:12:13 +08:00
Jiaming Yuan
0b36f8fba1
[R] Fix CRAN test notes. (#8428) 
- Limit the number of used CPU cores in examples.
- Add a note for the constraint.
- Bring back the cleanup script.
 2022-11-09 02:03:30 +08:00
Jiaming Yuan
2ed3c29c8a
[CI] Cleanup github action tests. (#8397) 
- Merge doxygen build with sphinx.
- Use mamba on non-windows Github Action.
 2022-10-29 06:04:27 +08:00
Joyce
7174d60ed2
Fix Scorecard Github Action not working (#8402) 
* chore: create security policy

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* chore: only latest release on security police

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* chore: security policy support on effort base

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* Use dedicated e-mail address for security reporting

* fix: upgrade scorecard action version

Signed-off-by: Joyce Brum <joycebrum@google.com>

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>
Signed-off-by: Joyce Brum <joycebrum@google.com>
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-10-28 16:25:43 -04:00
Jiaming Yuan
cfd2a9f872
Extract dask and spark test into distributed test. (#8395) 
- Move test files.
- Run spark and dask separately to prevent conflicts.
- Gather common code into the testing module.
 2022-10-28 16:24:32 +08:00
Jiaming Yuan
a2593e60bf
Speedup R test on github. (#8388) 2022-10-26 18:02:27 +08:00
Jiaming Yuan
c69af90319
Fix github action r tests. (#8364) 2022-10-20 01:07:18 +08:00
Philip Hyunsu Cho
a71421e825
[CI] Update GitHub Actions to use macos-11 (#8321) 2022-10-08 00:40:43 -07:00
Alex
1082ccd3cc
GitHub Workflows security hardening (#8267) 
Signed-off-by: Alex <aleksandrosansan@gmail.com>
 2022-09-27 00:54:27 +08:00
Joyce
be5b95e743
Enable OpenSSF Scorecard Github Action (#8263) 
* chore: enable scorecard github action

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* docs: add scorecard badge to the README file

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>
 2022-09-25 13:02:36 -07:00
Jiaming Yuan
dd44ac91b8
[CI] Use binary R dependencies on Windows. (#8241) 2022-09-09 19:51:15 -07:00
Jiaming Yuan
3970e4e6bb
Move pylint helper from dmlc-core. (#8101) 
* Move pylint helper from dmlc-core.

- Move the helper into the XGBoost ci_build.
- Run it with multiprocessing.

* Fix original test.
 2022-07-23 08:12:37 +08:00
Jiaming Yuan
8bdea72688
[Python] Require black and isort for new Python files. (#8096) 
* [Python] Require black and isort for new Python files.

- Require black and isort for spark and dask module.

These files are relatively new and are more conform to the black formatter. We will
convert the rest of the library as we move forward.

Other libraries including dask/distributed and optuna use the same formatting style and
have a more strict standard. The black formatter is indeed quite nice, automating it can
help us unify the code style.

- Gather Python checks into a single script.
 2022-07-20 10:25:24 +08:00
Jiaming Yuan
dae7a41baa
Update Python requirement to >=3.8. (#8071) 
Additional changes:
- Use mamba for CPU test on Jenkins.
- Cleanup CPU test dependencies.
- Restore some of the modin tests
 2022-07-14 18:01:47 +08:00
WeichenXu
176fec8789
PySpark XGBoost integration (#8020) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2022-07-13 13:11:18 +08:00
Jiaming Yuan
f24bfc7684
Bump R cache version. (#8044) 2022-07-03 03:53:05 +08:00
Jiaming Yuan
e58e417603
[CI] Fix lintr error. (#8011) 2022-06-20 22:17:14 +08:00
Jiaming Yuan
718472dbe2
[CI] Upgrade GitHub action Windows workers. (#7739) 2022-03-20 01:44:33 +08:00
Jiaming Yuan
1441a6cd27
[CI] Update R cache. (#7646) 2022-02-11 19:50:11 +08:00
Philip Hyunsu Cho
34a238ca98
[CI] Clean up Python wheel build pipeline (#7626) 
* [CI] Always upload artifacts to [branch_name]/

* [CI] Move detailed setup inside build_python_wheels.sh

* Fix typo
 2022-02-03 00:55:44 -08:00
Philip Hyunsu Cho
f6e6d0b2c0
[CI] Build Python wheels for MacOS (x86_64 and arm64) (#7621) 
* Build Python wheels for OSX (x86_64 and arm64)

* Use Conda's libomp when running Python tests

* fix

* Add comment to explain CIBW_TARGET_OSX_ARM64

* Update release script

* Add comments in build_python_wheels.sh

* Document wheel pipeline
 2022-02-02 17:35:48 -08:00
Philip Hyunsu Cho
619c450a49
[CI] Add missing step extract_branch (#7479) 2021-11-24 17:35:59 +08:00
Jiaming Yuan
820e1c01ef
Fix macos package upload. (#7475) 
* Split up the tests.
 2021-11-24 03:43:49 +08:00
Jiaming Yuan
488f12a996
Fix github macos package upload. (#7474) 2021-11-24 00:29:11 +08:00
Philip Hyunsu Cho
96a9848c9e
[CI] Fix continuous delivery pipeline for MacOS (#7472) 2021-11-23 22:22:08 +08:00
Jiaming Yuan
38ca96c9fc
[CI] Install igraph as binary. (#7417) 2021-11-12 19:04:28 +08:00
Jiaming Yuan
239dbb3c0a
Move macos test to github action. (#7382) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2021-10-30 14:40:32 +08:00
Philip Hyunsu Cho
336af4f974
Work around a segfault observed in SparsePage::Push() (#7161) 
* Work around a segfault observed in SparsePage::Push()

* Revert "Work around a segfault observed in SparsePage::Push()"

This reverts commit 30934844d00908750a5442082eb4769b1489f6a9.

* Don't call vector::resize() inside OpenMP block

* Set GITHUB_PAT env var to fix R tests

* Use built-in GITHUB_TOKEN
 2021-08-08 02:12:30 -07:00
Jiaming Yuan
e6088366df
Export Python Interface for external memory. (#7070) 
* Add Python iterator interface.
* Add tests.
* Add demo.
* Add documents.
* Handle empty dataset.
 2021-07-22 15:15:53 +08:00
Philip Hyunsu Cho
2801d69fb7
[CI] Pin libomp to 11.1.0 (#7107) 2021-07-15 11:16:51 +08:00
Jiaming Yuan
8e8232fb4c
[CI] Update R cache. (#7102) 2021-07-14 03:15:35 +08:00
Jiaming Yuan
345796825f
Optional find dependency in installed cmake config. (#7099) 
* Find dependency only when xgboost is built as static library.
* Resolve msvc warning.
* Add test for linking shared library.
 2021-07-11 17:20:55 +08:00
Jiaming Yuan
f937f514aa
Remove lz4 compression with external memory. (#7076) 2021-07-06 14:46:43 +08:00
Jiaming Yuan
29d6a5e2b8
[CI] Move appveyor tests to action (#6986) 
* Drop support for VS14, use VS15 instead.
* Drop support for mingw.
* Remove debug build.
* Split up jvm tests.
* Split up Python tests.
 2021-05-27 04:49:45 +08:00
Jiaming Yuan
a4bc7ecf27
Restore R cache on github action. (#6985) 2021-05-25 18:53:44 +08:00
James Lamb
894e9bc5d4
[R-package] remove dependency on {magrittr} (#6928) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2021-05-13 04:34:59 +08:00
Jiaming Yuan
db6285fb55
[CI] Skip external memory gtest on osx. (#6901) 2021-04-30 08:59:33 +08:00
Jiaming Yuan
74b41637de
Revert "[jvm-packages] Add XGBOOST_RABIT_TRACKER_IP_FOR_TEST to set rabit tracker IP. (#6869)" (#6886) 
This reverts commit 2828da3c4c951baa45d1bb6f85c7b3a6657cd607.
 2021-04-21 11:20:10 -07:00
Bobby Wang
2828da3c4c
[jvm-packages] Add XGBOOST_RABIT_TRACKER_IP_FOR_TEST to set rabit tracker IP. (#6869) 
* Add `XGBOOST_RABIT_TRACKER_IP_FOR_TEST` to set rabit tracker IP

* change spark and rabit tracker IP to 127.0.0.1on GitHub Action.

Co-authored-by: fis <jm.yuan@outlook.com>
 2021-04-22 02:00:22 +08:00