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Author SHA1 Message Date
Jiaming Yuan
7a5586f3db
Fix GPU quantile distributed test. (#8076) 2022-07-16 11:40:53 +08:00
Jiaming Yuan
8fccc3c4ad
[dask] Fix potential error in demo. (#8079) 
* Use dask_cudf instead.
 2022-07-15 18:42:29 +08:00
Jiaming Yuan
647d3844dd
Make test for categorical data deterministic. (#8080) 2022-07-15 14:48:39 +08:00
Jiaming Yuan
dae7a41baa
Update Python requirement to >=3.8. (#8071) 
Additional changes:
- Use mamba for CPU test on Jenkins.
- Cleanup CPU test dependencies.
- Restore some of the modin tests
 2022-07-14 18:01:47 +08:00
Jiaming Yuan
8dd96013f1
Split up column matrix initialization. (#8060) 
* Split up column matrix initialization.

This PR splits the column matrix initialization into 2 steps, the first one initializes
the storage while the second one does the transpose. By doing so, we can reuse the code
for Quantile DMatrix.
 2022-07-14 10:34:47 +08:00
Philip Hyunsu Cho
36cf979b82
[CI] Fix S3 uploads (#8069) 
* [CI] Fix S3 upload issues

* Don't launch Docker containers when uploading to S3
 2022-07-13 16:23:00 -07:00
Jiaming Yuan
abaa593aa0
Fix compiler warnings. (#8059) 
- Remove unused parameters.
- Avoid comparison of different signedness.
 2022-07-14 05:29:56 +08:00
Jiaming Yuan
937352c78f
Fix R package Windows build. (#8065) 2022-07-14 05:27:38 +08:00
WeichenXu
176fec8789
PySpark XGBoost integration (#8020) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2022-07-13 13:11:18 +08:00
Jiaming Yuan
8959622836
[dask] Use an invalid port for test. (#8064) 2022-07-13 11:59:02 +08:00
Rory Mitchell
0bdaca25ca
Use single precision in gain calculation, use pointers instead of span. (#8051) 2022-07-12 21:56:27 +02:00
Jiaming Yuan
a5bc8e2c6a
Fix mypy error with the latest dask. (#8052) 
* Fix mypy error with latest dask.

Dask is adding type hints to its codebase and as the result, checks in XGBoost can be
performed more rigorously.

- Remove compatibility with old dask version where multi lock was missing.
- Restrict input of `X` to be non-series.
- Adopt latest definition of `Delayed`.
- Avoid passing optional `host_ip`.
- Avoid deprecated `worker.nthreads`.
 2022-07-09 08:02:42 +08:00
Jiaming Yuan
210eb471e9
[R] Implement feature info for DMatrix. (#8048) 2022-07-09 05:57:39 +08:00
Jiaming Yuan
701f32b227
[py-sckl] Raise import error if skl is not installed. (#8049) 2022-07-09 05:56:46 +08:00
Rory Mitchell
794cbaa60a
Fuse split evaluation kernels (#8026) 2022-07-05 10:24:31 +02:00
Jiaming Yuan
ff1c559084
Remove unused variable. (#8046) 2022-07-05 01:59:22 +08:00
Jiaming Yuan
8746f9cddf
Rename IterativeDMatrix. (#8045) 2022-07-04 18:52:31 +08:00
Jiaming Yuan
f24bfc7684
Bump R cache version. (#8044) 2022-07-03 03:53:05 +08:00
Michael Chirico
3af02584c1
error early if missing DiagrammeR (#8037) 2022-07-02 19:37:53 +08:00
Rory Mitchell
bc4f802b17
Batch UpdatePosition using cudaMemcpy (#7964) 2022-06-30 17:52:40 +02:00
kiwiwarmnfuzzy
2407381c3d
Force auc.cc to be statically linked (#8039) 2022-06-30 19:24:22 +08:00
Jiaming Yuan
e88d6e071d
Fix compiler warning in JSON IO. (#8031) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-06-30 01:13:22 +08:00
Jiaming Yuan
dcaf580476
Fix Python package source install. (#8036) 
* Copy gputreeshap.
 2022-06-29 21:45:09 +08:00
Rong Ou
6eb23353d7
Update nvflare demo for release 2.1.2 (#8038) 2022-06-29 17:58:06 +08:00
Joris LIMONIER
f470ad3af9
Fix multiple typos (#8028) 
Fix 4 "graphiz" instead of "graphviz".
 2022-06-27 19:21:58 +08:00
Rong Ou
45dc1f818a
Make federated plugin work with cmake 3.16.3 (#8029) 2022-06-27 17:26:41 +08:00
Rong Ou
0725fd6081
fix federated learning plugin (#8027) 2022-06-24 08:41:07 +08:00
Bobby Wang
a68580e2a7
[jvm-packages] fix executor crashing issue when transforming on xgboost4j-spark-gpu (#8025) 
* [jvm-packages] fix executor crashing issue when transforming on xgboost4j-spark-gpu

the API XGBoosterSetParam is not thread-safe. Dring the phase of transforming,
XGBoost runs several transforming tasks at a time, and each of them will set
the "gpu_id" and "predictor" parameters, so if several tasks (multi-threads)
all XGBoosterSetParam simultaneously, it may cause the memory to be corrupted
and cause SIGSEGV.

This PR first get the booster from broadcast and set to the correct gpu_id
and predictor, and then all transforming taskes will use the same booster to
do the transforming.
 2022-06-24 01:18:41 +08:00
Jiaming Yuan
f0c1b842bf
Implement sketching with adapter. (#8019) 2022-06-23 00:03:02 +08:00
Jiaming Yuan
142a208a90
Fix compiler warnings. (#8022) 
- Remove/fix unused parameters
- Remove deprecated code in rabit.
- Update dmlc-core.
 2022-06-22 21:29:10 +08:00
Bobby Wang
e44a082620
[jvm-packages] update nccl version to 2.12.12-1 (#8015) 2022-06-21 17:34:09 +08:00
Rong Ou
e5ec546da5
[Breaking] Remove rabit support for custom reductions and grow_local_histmaker updater (#7992) 2022-06-21 15:08:23 +08:00
Jiaming Yuan
4a87ea49b8
Reduce regularization for CPU gblinear. (#8013) 2022-06-21 01:05:27 +08:00
Jiaming Yuan
d285d6ba2a
Reduce regularization in GPU gblinear test. (#8010) 2022-06-20 23:55:12 +08:00
Jiaming Yuan
e58e417603
[CI] Fix lintr error. (#8011) 2022-06-20 22:17:14 +08:00
Jiaming Yuan
9b0eb66b78
Fix GPU driver test. (#8008) 
* Initialize the training parameter.
 2022-06-20 19:37:31 +08:00
Jiaming Yuan
637e42a0c0
Use 22.04 for RMM. (#8001) 
22.06 is not released yet.
 2022-06-17 04:07:31 +08:00
Jiaming Yuan
bb47fd8c49
[jvm-packages] Change log level for tracker message. (#7968) 2022-06-09 18:15:08 +08:00
Jiaming Yuan
8f8bd8147a
Fix LTR with weighted Quantile DMatrix. (#7975) 
* Fix LTR with weighted Quantile DMatrix.

* Better tests.
 2022-06-09 01:33:41 +08:00
Jiaming Yuan
1a33b50a0d
Fix compiler warnings. (#7974) 
- Remove unused parameters. There are still many warnings that are not yet
addressed. Currently, the warnings in dmlc-core dominate the error log.
- Remove `distributed` parameter from metric.
- Fixes some warnings about signed comparison.
 2022-06-06 22:56:25 +08:00
Jiaming Yuan
d48123d23b
Fix rmm build (#7973) 
- Optionally switch to c++17
- Use rmm CMake target.
- Workaround compiler errors.
- Fix GPUMetric inheritance.
- Run death tests even if it's built with RMM support.

Co-authored-by: jakirkham <jakirkham@gmail.com>
 2022-06-06 20:18:32 +08:00
Philip Hyunsu Cho
1ced638165
Document how to reproduce Docker environment from Jenkins (#7971) 2022-06-04 20:56:53 +09:00
Jiaming Yuan
b90c6d25e8
Implement max_cat_threshold for CPU. (#7957) 2022-06-04 11:02:46 +08:00
Bobby Wang
78694405a6
[jvm-packages] add jni for setting feature name and type (#7966) 2022-06-03 11:09:48 +08:00
Gavin Zhang
6426449c8b
Support IBM i OS (#7920) 2022-06-02 23:38:35 +08:00
Rong Ou
31e6902e43
Support GPU training in the NVFlare demo (#7965) 2022-06-02 21:52:36 +08:00
Jiaming Yuan
6b55150e80
Fix pylint errors. (#7967) 2022-06-02 18:04:46 +08:00
Jiaming Yuan
13b15e07e8
Handle formatted JSON input. (#7953) 2022-06-01 16:20:58 +08:00
Rong Ou
d3429f2ff6
Increase gRPC max receive message size for federated learning (#7958) 2022-06-01 13:21:54 +08:00
Bobby Wang
545fd4548e
[jvm-packages] refactor xgboost read/write (#7956) 
1. Removed the duplicated Default XGBoost read/write which is copied from
  spark 2.3.x
2. Put some utils into util package
 2022-06-01 11:38:49 +08:00