Commit Graph
464 Commits
Author SHA1 Message Date
Jiaming Yuan 317d7be6ee Always use partition based categorical splits. (#7857) 2022-05-03 22:30:32 +08:00
Rory Mitchell 90cce38236 Remove single_precision_histogram for gpu_hist (#7828) 2022-05-03 14:53:19 +02:00
Jiaming Yuan fdf533f2b9 [POC] Experimental support for l1 error. (#7812)
Support adaptive tree, a feature supported by both sklearn and lightgbm.  The tree leaf is recomputed based on residue of labels and predictions after construction.

For l1 error, the optimal value is the median (50 percentile).

This is marked as experimental support for the following reasons:
- The value is not well defined for distributed training, where we might have empty leaves for local workers. Right now I just use the original leaf value for computing the average with other workers, which might cause significant errors.
- Some follow-ups are required, for exact, pruner, and optimization for quantile function. Also, we need to calculate the initial estimation.
2022-04-26 21:41:55 +08:00
Jiaming Yuan d4796482b5 Fix failures on R hub and Win builder. (#7763)
* Update date.
* Workaround amalgamation build with clang. (SimpleDMatrix instantiation)
* Workaround compiler error with driver push.
* Revert autoconf requirement.
* Fix model IO on 32-bit environment. (i386)
* Clarify the function name.
2022-03-30 07:14:33 +08:00
Jiaming Yuan 4d81c741e9 External memory support for hist (#7531)
* Generate column matrix from gHistIndex.
* Avoid synchronization with the sparse page once the cache is written.
* Cleanups: Remove member variables/functions, change the update routine to look like approx and gpu_hist.
* Remove pruner.
2022-03-22 00:13:20 +08:00
Jiaming Yuan 996cc705af Small cleanup to hist tree method. (#7735)
* Remove special optimization using number of bins.
* Remove 1-based index for column sampling.
* Remove data layout.
* Unify update prediction cache.
2022-03-20 03:44:55 +08:00
Jiaming Yuan 9a400731d9 Replace device sync with stream sync. (#7737) 2022-03-19 23:22:23 +08:00
Jiaming Yuan 1d468e20a4 Optimize GPU evaluation function for categorical data. (#7705)
* Use transform and cache.
2022-02-28 17:46:29 +08:00
Jiaming Yuan 18a4af63aa Update documents and tests. (#7659)
* Revise documents after recent refactoring and cat support.
* Add tests for behavior of max_depth and max_leaves.
2022-02-26 03:57:47 +08:00
Jiaming Yuan 83a66b4994 Support categorical data for hist. (#7695)
* Extract partitioner from hist.
* Implement categorical data support by passing the gradient index directly into the partitioner.
* Organize/update document.
* Remove code for negative hessian.
2022-02-25 03:47:14 +08:00
Jiaming Yuan 6762c45494 Small cleanup to gradient index and hist. (#7668)
* Code comments.
* Const accessor to index.
* Remove some weird variables in the `Index` class.
* Simplify the `MemStackAllocator`.
2022-02-23 11:37:21 +08:00
Jiaming Yuan 671b3c8d8e Fix typo. (#7680) 2022-02-20 03:42:47 +08:00
Jiaming Yuan 7366d3b20c Ensure models with categorical splits don't use old binary format. (#7666) 2022-02-19 08:05:28 +08:00
Jiaming Yuan d625dc2047 Work around nvcc error. (#7673) 2022-02-19 01:41:46 +08:00
Jiaming Yuan 711f7f3851 Avoid std::terminate for R package. (#7661)
This is part of CRAN policies.
2022-02-17 01:27:20 +08:00
Jiaming Yuan 0d0abe1845 Support optimal partitioning for GPU hist. (#7652)
* Implement `MaxCategory` in quantile.
* Implement partition-based split for GPU evaluation.  Currently, it's based on the existing evaluation function.
* Extract an evaluator from GPU Hist to store the needed states.
* Added some CUDA stream/event utilities.
* Update document with references.
* Fixed a bug in approx evaluator where the number of data points is less than the number of categories.
2022-02-15 03:03:12 +08:00
Jiaming Yuan 2369d55e9a Add tests for prediction cache. (#7650)
* Extract the test from approx for other tree methods.
* Add note on how it works.
2022-02-15 00:28:00 +08:00
Jiaming Yuan 2775c2a1ab Prepare external memory support for hist. (#7638)
This PR prepares the GHistIndexMatrix to host the column matrix which is used by the hist tree method by accepting sparse_threshold parameter.

Some cleanups are made to ensure the correct batch param is being passed into DMatrix along with some additional tests for correctness of SimpleDMatrix.
2022-02-10 16:58:02 +08:00
Jiaming Yuan e060519d4f Avoid regenerating the gradient index for approx. (#7591) 2022-01-26 21:41:30 +08:00
Jiaming Yuan 5d7818e75d Remove omp_get_max_threads in tree updaters. (#7590) 2022-01-26 19:55:47 +08:00
Jiaming Yuan 6967ef7267 Remove omp_get_max_threads in objective. (#7589) 2022-01-24 04:35:49 +08:00
Jiaming Yuan deab0e32ba Validate out of range categorical value. (#7576)
* Use float in CPU categorical set to preserve the input value.
* Check out of range values.
2022-01-18 20:16:19 +08:00
Jiaming Yuan a1bcd33a3b [breaking] Change internal model serialization to UBJSON. (#7556)
* Use typed array for models.
* Change the memory snapshot format.
* Add new C API for saving to raw format.
2022-01-16 02:11:53 +08:00
Jiaming Yuan e5e47c3c99 Clarify the behavior of invalid categorical value handling. (#7529) 2022-01-13 16:11:52 +08:00
Philip Hyunsu Cho 20c0d60ac7 Restore functionality of max_depth=0 in hist (#7551)
* Restore functionality of max_depth=0 in hist

* Add test case
2022-01-11 01:37:44 +08:00
Jiaming Yuan 001503186c Rewrite approx (#7214)
This PR rewrites the approx tree method to use codebase from hist for better performance and code sharing.

The rewrite has many benefits:
- Support for both `max_leaves` and `max_depth`.
- Support for `grow_policy`.
- Support for mono constraint.
- Support for feature weights.
- Support for easier bin configuration (`max_bin`).
- Support for categorical data.
- Faster performance for most of the datasets. (many times faster)
- Support for prediction cache.
- Significantly better performance for external memory.
- Unites the code base between approx and hist.
2022-01-10 21:15:05 +08:00
Jiaming Yuan eea094e1bc Remove some warnings from clang. (#7533)
* Unused variable.
* Unnecessary virtual function.
2022-01-05 03:28:21 +08:00
Ikko Ashimine 5516281881 Fix typo in tree_model.cc (#7539)
occurance -> occurrence
2021-12-30 20:12:25 +08:00
Ginko Balboaandjiamingy 29bfa94bb6 Fix external memory with gpu_hist and subsampling combination bug. (#7481)
Instead of accessing data from the `original_page_`, access the data from the first page of the available batch.

fix #7476

Co-authored-by: jiamingy <jm.yuan@outlook.com>
2021-12-24 11:15:35 +08:00
Jiaming Yuan 7f399eac8b Use double for GPU Hist node sum. (#7507) 2021-12-22 08:41:35 +08:00
Jiaming Yuan 9ab73f737e Extract Sketch Entry from hist maker. (#7503)
* Extract Sketch Entry from hist maker.

* Add a new sketch container for sorted inputs.
* Optimize bin search.
2021-12-18 05:36:56 +08:00
Jiaming Yuan 01152f89ee Remove unused parameters. (#7499) 2021-12-09 14:24:51 +08:00
Jiaming Yuan eee527d264 Add approx partitioner. (#7467) 2021-11-27 15:22:06 +08:00
Jiaming Yuan 176110a22d Support external memory in CPU histogram building. (#7372) 2021-11-23 01:13:33 +08:00
Jiaming Yuan b0015fda96 Fix R CRAN failures. (#7404)
* Remove hist builder dtor.

* Initialize values.

* Tolerance.

* Remove the use of nthread in col maker.
2021-11-16 10:51:12 +08:00
Jiaming Yuan d4274bc556 Fix typo. (#7433) 2021-11-15 01:28:11 +08:00
Jiaming Yuan d7d1b6e3a6 CPU evaluation for cat data. (#7393)
* Implementation for one hot based.
* Implementation for partition based. (LightGBM)
2021-11-06 14:41:35 +08:00
Jiaming Yuan b06040b6d0 Implement a general array view. (#7365)
* Replace existing matrix and vector view.

This is to prepare for handling higher dimension data and prediction when we support multi-target models.
2021-11-05 04:16:11 +08:00
Jiaming Yuan 4100827971 Pass infomation about objective to tree methods. (#7385)
* Define the `ObjInfo` and pass it down to every tree updater.
2021-11-04 01:52:44 +08:00
Jiaming Yuan ccdabe4512 Support building gradient index with cat data. (#7371) 2021-11-03 22:37:37 +08:00
Jiaming Yuan a55d43ccfd Add test for invalid categorical data values. (#7380)
* Add test for invalid categorical data values.

* Add check during sketching.
2021-11-02 18:00:52 +08:00
Jiaming Yuan ac9bfaa4f2 Handle missing values in dataframe with category dtype. (#7331)
* Replace -1 in pandas initializer.
* Unify `IsValid` functor.
* Mimic pandas data handling in cuDF glue code.
* Check invalid categories.
* Fix DDM sketching.
2021-10-28 03:33:54 +08:00
Jiaming Yuan 8d7c6366d7 Accept histogram cut instead gradient index in evaluation. (#7336) 2021-10-20 18:04:46 +08:00
Jiaming Yuan 8e619010d0 Extract CPUExpandEntry and HistParam. (#7321)
* Remove kRootNid.
* Check for empty hessian.
2021-10-17 14:22:25 +08:00
Jiaming Yuan a7d0c66457 Remove unused code. (#7293) 2021-10-12 15:04:41 +08:00
Jiaming Yuan c311a8c1d8 Enable compiling with system cub. (#7232)
- Tested with all CUDA 11.x.
- Workaround cub scan by using discard iterator in AUC.
- Limit the size of Argsort when compiled with CUDA cub.
2021-09-17 14:28:18 +08:00
Jiaming Yuan 22d56cebf1 Encode pandas categorical data automatically. (#7231) 2021-09-17 11:09:55 +08:00
Jiaming Yuan 3515931305 Initial support for external memory in gradient index. (#7183)
* Add hessian to batch param in preparation of new approx impl.
* Extract a push method for gradient index matrix.
* Use span instead of vector ref for hessian in sketching.
* Create a binary format for gradient index.
2021-09-13 12:40:56 +08:00
Jiaming YuanandAndy Adinets 7a1d67f9cb [breaking] Use integer atomic for GPU histogram. (#7180)
On GPU we use rouding factor to truncate the gradient for deterministic results. This PR changes the gradient representation to fixed point number with exponent aligned with rounding factor.

    [breaking] Drop non-deterministic histogram.
    Use fixed point for shared memory.

This PR is to improve the performance of GPU Hist. 

Co-authored-by: Andy Adinets <aadinets@nvidia.com>
2021-08-28 05:17:05 +08:00
Jiaming Yuan ee8d1f5ed8 Fix histogram truncation. (#7181)
* Fix truncation.

* Lint.

* lint.
2021-08-24 18:34:32 -07:00