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Author SHA1 Message Date
Jiaming Yuan 50d854e02e [CI] Test with latest RAPIDS. (#7816) 2022-04-30 11:55:10 -07:00
Bobby Wang 1b103e1f5f [CI] make container be able to re-attached (#7848) 
When re-starting the container, it will fail in entrypoint.sh which
will exit when adding an existing group or user
 2022-04-29 19:00:35 -07:00
Jiaming Yuan 288c52596c Define bin type. (#7850) 2022-04-29 19:41:39 +08:00
Michael Allman f7db16add1 Ignore all Java exceptions when looking for Linux musl support (#7844) 2022-04-28 15:44:30 +08:00
Bobby Wang a94e1b172e [jvm-packages] Fix model compatibility (#7845) 2022-04-28 02:05:38 +08:00
Bobby Wang 686caad40c [jvm-package] remove the coalesce in barrier mode (#7846) 2022-04-27 23:34:22 +08:00
Jiaming Yuan fdf533f2b9 [POC] Experimental support for l1 error. (#7812) 
Support adaptive tree, a feature supported by both sklearn and lightgbm.  The tree leaf is recomputed based on residue of labels and predictions after construction.

For l1 error, the optimal value is the median (50 percentile).

This is marked as experimental support for the following reasons:
- The value is not well defined for distributed training, where we might have empty leaves for local workers. Right now I just use the original leaf value for computing the average with other workers, which might cause significant errors.
- Some follow-ups are required, for exact, pruner, and optimization for quantile function. Also, we need to calculate the initial estimation.
 2022-04-26 21:41:55 +08:00
Jiaming Yuan ad06172c6b Refactor pandas dataframe handling. (#7843) 2022-04-26 18:53:43 +08:00
Bobby Wang bef1f939ce [doc] remove the doc about killing SparkContext [skip ci] (#7840) 2022-04-25 19:29:16 +08:00
Bobby Wang dc2e699656 [Breaking][jvm-packages] Use barrier execution mode (#7836) 
With the introduction of the barrier execution mode. we don't need to kill SparkContext when some xgboost tasks failed. Instead, Spark will handle the errors for us. So in this PR, `killSparkContextOnWorkerFailure` parameter is deleted.
 2022-04-25 17:09:52 +08:00
Bobby Wang 6ece549a90 [doc] update the jvm tutorial to 1.6.1 [skip ci] (#7834) 2022-04-24 14:25:22 +08:00
Jiaming Yuan 332380479b Avoid warning in np primitive type tests. (#7833) 2022-04-23 02:07:01 +08:00
Bobby Wang c45665a55a [jvm-packages] move the dmatrix building into rabit context (#7823) 
This fixes the QuantileDeviceDMatrix in distributed environment.
 2022-04-23 00:06:50 +08:00
Jiaming Yuan f0f76259c9 Remove STRING_TYPES. (#7827) 2022-04-22 19:07:51 +08:00
forestkey c13a2a3114 [doc] "irrevelant" to "irrelevant" (#7832) 2022-04-22 16:54:30 +08:00
Jiaming Yuan c70fa502a5 Expose feature_types to sklearn interface. (#7821) 2022-04-21 20:23:35 +08:00
Jiaming Yuan 401d451569 Clear configuration cache. (#7826) 2022-04-21 19:09:54 +08:00
Jiaming Yuan 52d4eda786 Deprecate use_label_encoder in XGBClassifier. (#7822) 
* Deprecate `use_label_encoder` in XGBClassifier.

* We have removed the encoder, now prepare to remove the indicator.
 2022-04-21 13:14:02 +08:00
Jiaming Yuan 5815df4c46 Remove warning in 1.4. (#7815) 2022-04-20 01:19:09 +08:00
Jiaming YuanandPhilip Hyunsu Cho d0de954af2 v1.6.0 release note. [skip ci] (#7746) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-04-16 16:27:54 +08:00
Jiaming Yuan 5dea21273a Fix training continuation with categorical model. (#7810) 
* Make sure the task is initialized before construction of tree updater.

This is a quick fix meant to be backported to 1.6, for a full fix we should pass the model
param into tree updater by reference instead.
 2022-04-15 18:21:02 +08:00
Bobby Wang 2d83b2ad8f [jvm-packages] add hostIp and python exec for rabit tracker (#7808) 2022-04-15 16:28:43 +08:00
Bobby Wang 6f032b7152 [doc] fix a typo in jvm/index.rst (#7806) 2022-04-13 17:02:42 -07:00
dependabot[bot]anddependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 1bb1913811 Bump hadoop-common from 2.10.1 to 3.2.3 in /jvm-packages/xgboost4j-flink (#7801) 
Bumps hadoop-common from 2.10.1 to 3.2.3.

---
updated-dependencies:
- dependency-name: org.apache.hadoop:hadoop-common
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-04-13 22:24:44 +08:00
Ikko Ashimine 56e4baff7c [doc] Fix typo in build.rst (#7800) 
avaiable -> available
 2022-04-13 16:45:26 +08:00
Bobby Wang 3f536b5308 [jvm-packages] fix evaluation when featuresCols is used (#7798) 2022-04-13 12:52:50 +08:00
Bobby WangandSameer Raheja 4b00c64d96 [doc] improve xgboost4j-spark-gpu doc [skip ci] (#7793) 
Co-authored-by: Sameer Raheja <sameerz@users.noreply.github.com>
 2022-04-12 12:02:16 +08:00
Bobby Wang 118192f116 [jvm-packages] xgboost4j-spark should work when featuresCols is specified (#7789) 2022-04-08 13:21:04 +08:00
Bobby Wang 729d227b89 [jvm-packages] remove the dep of com.fasterxml.jackson (#7791) 2022-04-08 13:04:34 +08:00
Bobby WangandJiaming Yuan 89d6419fd5 [jvm-packages] add doc for xgboost4j-spark-gpu (#7779) 
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2022-04-07 11:35:01 +08:00
Bobby Wang 2454407f3a [jvm-packages] unify setFeaturesCol API for XGBoostRegressor (#7784) 2022-04-05 13:35:33 +08:00
Philip Hyunsu Cho e5ab8f3ebe [CI] Speed up CPU test pipeline (#7772) 2022-04-01 02:39:04 +08:00
Jiaming Yuan bcce17e688 Remove text loading in basic walk through demo. (#7753) 2022-04-01 00:59:42 +08:00
giuliohome c467e90ac1 [doc] Update doc for Kubernetes Operator (#7777) 2022-03-31 23:10:49 +08:00
Jiaming YuanandPhilip Hyunsu Cho fd78af404b Drop support for deprecated CUDA architectures. (#7774) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-03-31 21:42:23 +08:00
Jiaming Yuan 02dd7b6913 Remove use of distutils. (#7770) 
distutils is deprecated and replaced by other stdlib constructs.
 2022-03-31 19:03:10 +08:00
Philip Hyunsu Cho e8eff3581b [CI] Enable faulthandler to show details when 0xC0000005 error occurs (#7771) (#7775) 2022-03-31 17:40:06 +08:00
Jiaming Yuan 6fa1afdffc Avoid compiler warning about comparison. (#7768) 2022-03-31 08:52:14 +08:00
Jiaming Yuan 522636cb52 Bump version. (#7769) 2022-03-31 06:33:22 +08:00
Jiaming Yuan 9150fdbd4d Support pandas nullable types. (#7760) 2022-03-30 08:51:52 +08:00
Jiaming Yuan d4796482b5 Fix failures on R hub and Win builder. (#7763) 
* Update date.
* Workaround amalgamation build with clang. (SimpleDMatrix instantiation)
* Workaround compiler error with driver push.
* Revert autoconf requirement.
* Fix model IO on 32-bit environment. (i386)
* Clarify the function name.
 2022-03-30 07:14:33 +08:00
Jiaming Yuan a50b84244e Cleanup configuration for constraints. (#7758) 2022-03-29 04:22:46 +08:00
Jiaming Yuan 3c9b04460a Move num_parallel_tree to model parameter. (#7751) 
The size of forest should be a property of model itself instead of a training
hyper-parameter.
 2022-03-29 02:32:42 +08:00
Jiaming Yuan 8b3ecfca25 Mitigate flaky tests. (#7749) 
* Skip non-increasing test with external memory when subsample is used.
* Increase bin numbers for boost from prediction test. This mitigates the effect of
  non-deterministic partitioning.
 2022-03-28 21:20:50 +08:00
Christian Marquardt 39c5616af2 Added CPPFLAGS and LDFLAGS to the testing for OpenMP during R installation from source. (#7759) 2022-03-28 19:14:07 +08:00
Haoming Chen b37ff3d492 Fix cox objective test by using XGBOOST_PARALLEL_STABLE_SORT (#7756) 2022-03-26 17:58:30 +08:00
Jiaming Yuan b3ba0e8708 Check cupy lazily. (#7752) 2022-03-26 06:09:58 +08:00
Jiaming Yuan af0cf88921 Workaround compiler error. (#7745) 2022-03-25 17:05:14 +08:00
Jiaming Yuan 64575591d8 Use context in SetInfo. (#7687) 
* Use the name `Context`.
* Pass a context object into `SetInfo`.
* Add context to proxy matrix.
* Add context to iterative DMatrix.

This is to remove the use of the default number of threads during `SetInfo` as a follow-up on
removing the global omp variable while preparing for CUDA stream semantic.  Currently, XGBoost
uses the legacy CUDA stream, we will gradually remove them in the future in favor of non-blocking streams.
 2022-03-24 22:16:26 +08:00
Oleksandr PryimakandPhilip Hyunsu Cho f5b20286e2 [jvm-packages] Launch dev jvm image under my user (#4676) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-03-23 10:39:51 -07:00