[R] resolve brace_linter warnings (#8564)
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@ -615,9 +615,11 @@ cb.gblinear.history <- function(sparse=FALSE) {
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coefs <- NULL
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init <- function(env) {
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if (!is.null(env$bst)) { # xgb.train:
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} else if (!is.null(env$bst_folds)) { # xgb.cv:
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} else stop("Parent frame has neither 'bst' nor 'bst_folds'")
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# xgb.train(): bst will be present
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# xgb.cv(): bst_folds will be present
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if (is.null(env$bst) && is.null(env$bst_folds)) {
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stop("Parent frame has neither 'bst' nor 'bst_folds'")
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}
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}
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# convert from list to (sparse) matrix
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@ -82,7 +82,7 @@ check.booster.params <- function(params, ...) {
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# interaction constraints parser (convert from list of column indices to string)
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if (!is.null(params[['interaction_constraints']]) &&
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typeof(params[['interaction_constraints']]) != "character"){
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typeof(params[['interaction_constraints']]) != "character") {
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# check input class
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if (!identical(class(params[['interaction_constraints']]), 'list')) stop('interaction_constraints should be class list')
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if (!all(unique(sapply(params[['interaction_constraints']], class)) %in% c('numeric', 'integer'))) {
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@ -251,8 +251,7 @@ generate.cv.folds <- function(nfold, nrows, stratified, label, params) {
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# Creates CV folds stratified by the values of y.
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# It was borrowed from caret::createFolds and simplified
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# by always returning an unnamed list of fold indices.
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xgb.createFolds <- function(y, k = 10)
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{
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xgb.createFolds <- function(y, k = 10) {
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if (is.numeric(y)) {
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## Group the numeric data based on their magnitudes
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## and sample within those groups.
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@ -76,7 +76,7 @@ xgb.get.DMatrix <- function(data, label = NULL, missing = NA, weight = NULL, nth
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stop("label must be provided when data is a matrix")
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}
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dtrain <- xgb.DMatrix(data, label = label, missing = missing, nthread = nthread)
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if (!is.null(weight)){
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if (!is.null(weight)) {
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setinfo(dtrain, "weight", weight)
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}
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} else {
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@ -218,7 +218,7 @@ getinfo.xgb.DMatrix <- function(object, name, ...) {
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}
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if (name == "feature_name" || name == "feature_type") {
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ret <- .Call(XGDMatrixGetStrFeatureInfo_R, object, name)
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} else if (name != "nrow"){
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} else if (name != "nrow") {
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ret <- .Call(XGDMatrixGetInfo_R, object, name)
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} else {
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ret <- nrow(object)
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@ -82,7 +82,7 @@
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#'
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#' @export
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xgb.importance <- function(feature_names = NULL, model = NULL, trees = NULL,
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data = NULL, label = NULL, target = NULL){
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data = NULL, label = NULL, target = NULL) {
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if (!(is.null(data) && is.null(label) && is.null(target)))
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warning("xgb.importance: parameters 'data', 'label' and 'target' are deprecated")
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@ -104,7 +104,11 @@ xgb.importance <- function(feature_names = NULL, model = NULL, trees = NULL,
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XGBoosterFeatureScore_R, model$handle, jsonlite::toJSON(args, auto_unbox = TRUE, null = "null")
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)
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names(results) <- c("features", "shape", "weight")
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n_classes <- if (length(results$shape) == 2) { results$shape[2] } else { 0 }
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if (length(results$shape) == 2) {
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n_classes <- results$shape[2]
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} else {
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n_classes <- 0
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}
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importance <- if (n_classes == 0) {
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data.table(Feature = results$features, Weight = results$weight)[order(-abs(Weight))]
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} else {
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@ -62,7 +62,7 @@
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#'
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#' @export
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xgb.model.dt.tree <- function(feature_names = NULL, model = NULL, text = NULL,
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trees = NULL, use_int_id = FALSE, ...){
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trees = NULL, use_int_id = FALSE, ...) {
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check.deprecation(...)
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if (!inherits(model, "xgb.Booster") && !is.character(text)) {
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@ -82,7 +82,7 @@ xgb.model.dt.tree <- function(feature_names = NULL, model = NULL, text = NULL,
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stop("trees: must be a vector of integers.")
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}
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if (is.null(text)){
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if (is.null(text)) {
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text <- xgb.dump(model = model, with_stats = TRUE)
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}
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@ -102,7 +102,9 @@ xgb.plot.importance <- function(importance_matrix = NULL, top_n = NULL, measure
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original_mar <- par()$mar
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# reset margins so this function doesn't have side effects
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on.exit({par(mar = original_mar)})
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on.exit({
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par(mar = original_mar)
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})
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mar <- original_mar
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if (!is.null(left_margin))
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@ -61,7 +61,7 @@
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#'
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#' @export
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xgb.plot.multi.trees <- function(model, feature_names = NULL, features_keep = 5, plot_width = NULL, plot_height = NULL,
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render = TRUE, ...){
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render = TRUE, ...) {
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if (!requireNamespace("DiagrammeR", quietly = TRUE)) {
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stop("DiagrammeR is required for xgb.plot.multi.trees")
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}
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@ -68,7 +68,7 @@
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#'
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#' @export
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xgb.plot.tree <- function(feature_names = NULL, model = NULL, trees = NULL, plot_width = NULL, plot_height = NULL,
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render = TRUE, show_node_id = FALSE, ...){
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render = TRUE, show_node_id = FALSE, ...) {
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check.deprecation(...)
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if (!inherits(model, "xgb.Booster")) {
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stop("model: Has to be an object of class xgb.Booster")
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@ -12,7 +12,7 @@ cat('running cross validation\n')
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# do cross validation, this will print result out as
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# [iteration] metric_name:mean_value+std_value
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# std_value is standard deviation of the metric
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xgb.cv(param, dtrain, nrounds, nfold = 5, metrics = {'error'})
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xgb.cv(param, dtrain, nrounds, nfold = 5, metrics = 'error')
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cat('running cross validation, disable standard deviation display\n')
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# do cross validation, this will print result out as
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@ -24,7 +24,7 @@ accuracy.before <- (sum((predict(bst, agaricus.test$data) >= 0.5) == agaricus.te
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pred_with_leaf <- predict(bst, dtest, predleaf = TRUE)
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head(pred_with_leaf)
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create.new.tree.features <- function(model, original.features){
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create.new.tree.features <- function(model, original.features) {
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pred_with_leaf <- predict(model, original.features, predleaf = TRUE)
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cols <- list()
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for (i in 1:model$niter) {
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@ -170,8 +170,9 @@ test_that("SHAPs sum to predictions, with or without DART", {
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label = y,
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nrounds = nrounds)
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pr <- function(...)
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pr <- function(...) {
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predict(fit, newdata = d, ...)
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}
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pred <- pr()
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shap <- pr(predcontrib = TRUE)
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shapi <- pr(predinteraction = TRUE)
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@ -17,7 +17,7 @@ test_that("interaction constraints for regression", {
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# Set all observations to have the same x3 values then increment
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# by the same amount
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preds <- lapply(c(1, 2, 3), function(x){
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preds <- lapply(c(1, 2, 3), function(x) {
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tmat <- matrix(c(x1, x2, rep(x, 1000)), ncol = 3)
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return(predict(bst, tmat))
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})
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@ -86,7 +86,10 @@ For that purpose, we will:
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```{r classToIntegers}
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# Convert from classes to numbers
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y <- train[, nameLastCol, with = FALSE][[1]] %>% gsub('Class_','',.) %>% {as.integer(.) -1}
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y <- train[, nameLastCol, with = FALSE][[1]] %>%
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gsub('Class_','',.) %>%
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as.integer %>%
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subtract(., 1)
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# Display the first 5 levels
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y[1:5]
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