move python example
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demo/guide-python/basic_walkthrough.py
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70
demo/guide-python/basic_walkthrough.py
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#!/usr/bin/python
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import sys
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import numpy as np
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import scipy.sparse
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# append the path to xgboost, you may need to change the following line
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# alternatively, you can add the path to PYTHONPATH environment variable
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sys.path.append('../../wrapper')
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import xgboost as xgb
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### simple example
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# load file from text file, also binary buffer generated by xgboost
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dtrain = xgb.DMatrix('../data/agaricus.txt.train')
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dtest = xgb.DMatrix('../data/agaricus.txt.test')
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# specify parameters via map, definition are same as c++ version
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param = {'max_depth':2, 'eta':1, 'silent':1, 'objective':'binary:logistic' }
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# specify validations set to watch performance
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watchlist = [(dtest,'eval'), (dtrain,'train')]
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num_round = 2
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bst = xgb.train(param, dtrain, num_round, watchlist)
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# this is prediction
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preds = bst.predict(dtest)
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labels = dtest.get_label()
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print ('error=%f' % ( sum(1 for i in range(len(preds)) if int(preds[i]>0.5)!=labels[i]) /float(len(preds))))
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bst.save_model('0001.model')
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# dump model
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bst.dump_model('dump.raw.txt')
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# dump model with feature map
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bst.dump_model('dump.nice.txt','../data/featmap.txt')
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# save dmatrix into binary buffer
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dtest.save_binary('dtest.buffer')
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bst.save_model('xgb.model')
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# load model and data in
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bst2 = xgb.Booster(model_file='xgb.model')
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dtest2 = xgb.DMatrix('dtest.buffer')
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preds2 = bst2.predict(dtest2)
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# assert they are the same
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assert np.sum(np.abs(preds2-preds)) == 0
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###
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# build dmatrix from scipy.sparse
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print ('start running example of build DMatrix from scipy.sparse')
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labels = []
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row = []; col = []; dat = []
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i = 0
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for l in open('../data/agaricus.txt.train'):
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arr = l.split()
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labels.append( int(arr[0]))
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for it in arr[1:]:
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k,v = it.split(':')
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row.append(i); col.append(int(k)); dat.append(float(v))
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i += 1
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csr = scipy.sparse.csr_matrix( (dat, (row,col)) )
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dtrain = xgb.DMatrix( csr )
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dtrain.set_label(labels)
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watchlist = [(dtest,'eval'), (dtrain,'train')]
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bst = xgb.train( param, dtrain, num_round, watchlist )
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print ('start running example of build DMatrix from numpy array')
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# NOTE: npymat is numpy array, we will convert it into scipy.sparse.csr_matrix in internal implementation,then convert to DMatrix
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npymat = csr.todense()
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dtrain = xgb.DMatrix( npymat)
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dtrain.set_label(labels)
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watchlist = [(dtest,'eval'), (dtrain,'train')]
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bst = xgb.train( param, dtrain, num_round, watchlist )
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