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CodingCat 2016-03-01 23:35:59 -05:00
parent 55e36893cd
commit f8fff6c6fc
36 changed files with 211 additions and 199 deletions
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2
Makefile
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@ -84,7 +84,7 @@ $(DMLC_CORE)/libdmlc.a:
$(RABIT)/lib/$(LIB_RABIT):
+ cd $(RABIT); make lib/$(LIB_RABIT); cd $(ROOTDIR)
jvm-packages: jvm-packages/lib/libxgboost4j.so
jvm: jvm-packages/lib/libxgboost4j.so
SRC = $(wildcard src/*.cc src/*/*.cc)
ALL_OBJ = $(patsubst src/%.cc, build/%.o, $(SRC)) $(PLUGIN_OBJS)

2
jvm-packages/checkstyle-suppressions.xml
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@ -29,5 +29,5 @@
<suppressions>
<suppress checks=".*"
files="xgboost4j/src/main/java/org/dmlc/xgboost4j/XgboostJNI.java"/>
files="xgboost4j/src/main/java/ml/dmlc/xgboost4j/XgboostJNI.java"/>
</suppressions>

0
jvm-packages/create_wrap.bat → jvm-packages/create_jni.bat
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2
jvm-packages/create_wrap.sh → jvm-packages/create_jni.sh
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@ -16,7 +16,7 @@ if [ $(uname) == "Darwin" ]; then
fi
cd ..
make jvm-packages no_omp=${dis_omp}
make jvm no_omp=${dis_omp}
cd jvm-packages
echo "move native lib"

12
jvm-packages/xgboost4j-demo/src/main/java/org/dmlc/xgboost4j/demo/BasicWalkThrough.java → jvm-packages/xgboost4j-demo/src/main/java/ml/dmlc/xgboost4j/demo/BasicWalkThrough.java
View File

@ -13,17 +13,19 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j.demo;
import org.dmlc.xgboost4j.*;
import org.dmlc.xgboost4j.demo.util.DataLoader;
package ml.dmlc.xgboost4j.demo;
import java.io.File;
import java.io.IOException;
import java.io.UnsupportedEncodingException;
import java.util.Arrays;
import java.util.HashMap;
import ml.dmlc.xgboost4j.Booster;
import ml.dmlc.xgboost4j.DMatrix;
import ml.dmlc.xgboost4j.XGBoost;
import ml.dmlc.xgboost4j.XGBoostError;
import ml.dmlc.xgboost4j.demo.util.DataLoader;
/**
* a simple example of java wrapper for xgboost
*

9
jvm-packages/xgboost4j-demo/src/main/java/org/dmlc/xgboost4j/demo/BoostFromPrediction.java → jvm-packages/xgboost4j-demo/src/main/java/ml/dmlc/xgboost4j/demo/BoostFromPrediction.java
View File

@ -13,12 +13,15 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j.demo;
import org.dmlc.xgboost4j.*;
package ml.dmlc.xgboost4j.demo;
import java.util.HashMap;
import ml.dmlc.xgboost4j.Booster;
import ml.dmlc.xgboost4j.DMatrix;
import ml.dmlc.xgboost4j.XGBoost;
import ml.dmlc.xgboost4j.XGBoostError;
/**
* example for start from a initial base prediction
*

10
jvm-packages/xgboost4j-demo/src/main/java/org/dmlc/xgboost4j/demo/CrossValidation.java → jvm-packages/xgboost4j-demo/src/main/java/ml/dmlc/xgboost4j/demo/CrossValidation.java
View File

@ -13,15 +13,15 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j.demo;
import org.dmlc.xgboost4j.DMatrix;
import org.dmlc.xgboost4j.XGBoost;
import org.dmlc.xgboost4j.XGBoostError;
package ml.dmlc.xgboost4j.demo;
import java.io.IOException;
import java.util.HashMap;
import ml.dmlc.xgboost4j.DMatrix;
import ml.dmlc.xgboost4j.XGBoost;
import ml.dmlc.xgboost4j.XGBoostError;
/**
* an example of cross validation
*

23
jvm-packages/xgboost4j-demo/src/main/java/org/dmlc/xgboost4j/demo/CustomObjective.java → jvm-packages/xgboost4j-demo/src/main/java/ml/dmlc/xgboost4j/demo/CustomObjective.java
View File

@ -13,16 +13,16 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j.demo;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.dmlc.xgboost4j.*;
package ml.dmlc.xgboost4j.demo;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import ml.dmlc.xgboost4j.*;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
/**
* an example user define objective and eval
* NOTE: when you do customized loss function, the default prediction value is margin
@ -64,7 +64,7 @@ public class CustomObjective {
}
@Override
public List<float[]> getGradient(float[][] predicts, org.dmlc.xgboost4j.DMatrix dtrain) {
public List<float[]> getGradient(float[][] predicts, DMatrix dtrain) {
int nrow = predicts.length;
List<float[]> gradients = new ArrayList<float[]>();
float[] labels;
@ -114,7 +114,7 @@ public class CustomObjective {
}
@Override
public float eval(float[][] predicts, org.dmlc.xgboost4j.DMatrix dmat) {
public float eval(float[][] predicts, DMatrix dmat) {
float error = 0f;
float[] labels;
try {
@ -138,11 +138,9 @@ public class CustomObjective {
public static void main(String[] args) throws XGBoostError {
//load train mat (svmlight format)
org.dmlc.xgboost4j.DMatrix trainMat =
new org.dmlc.xgboost4j.DMatrix("../../demo/data/agaricus.txt.train");
DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train");
//load valid mat (svmlight format)
org.dmlc.xgboost4j.DMatrix testMat =
new org.dmlc.xgboost4j.DMatrix("../../demo/data/agaricus.txt.test");
DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test");
HashMap<String, Object> params = new HashMap<String, Object>();
params.put("eta", 1.0);
@ -154,8 +152,7 @@ public class CustomObjective {
int round = 2;
//specify watchList
HashMap<String, org.dmlc.xgboost4j.DMatrix> watches =
new HashMap<String, org.dmlc.xgboost4j.DMatrix>();
HashMap<String, DMatrix> watches = new HashMap<String, DMatrix>();
watches.put("train", trainMat);
watches.put("test", testMat);

9
jvm-packages/xgboost4j-demo/src/main/java/org/dmlc/xgboost4j/demo/ExternalMemory.java → jvm-packages/xgboost4j-demo/src/main/java/ml/dmlc/xgboost4j/demo/ExternalMemory.java
View File

@ -13,12 +13,15 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j.demo;
import org.dmlc.xgboost4j.*;
package ml.dmlc.xgboost4j.demo;
import java.util.HashMap;
import ml.dmlc.xgboost4j.Booster;
import ml.dmlc.xgboost4j.DMatrix;
import ml.dmlc.xgboost4j.XGBoost;
import ml.dmlc.xgboost4j.XGBoostError;
/**
* simple example for using external memory version
*

9
jvm-packages/xgboost4j-demo/src/main/java/org/dmlc/xgboost4j/demo/GeneralizedLinearModel.java → jvm-packages/xgboost4j-demo/src/main/java/ml/dmlc/xgboost4j/demo/GeneralizedLinearModel.java
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@ -13,10 +13,13 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j.demo;
package ml.dmlc.xgboost4j.demo;
import org.dmlc.xgboost4j.*;
import org.dmlc.xgboost4j.demo.util.CustomEval;
import ml.dmlc.xgboost4j.Booster;
import ml.dmlc.xgboost4j.DMatrix;
import ml.dmlc.xgboost4j.XGBoost;
import ml.dmlc.xgboost4j.XGBoostError;
import ml.dmlc.xgboost4j.demo.util.CustomEval;
import java.util.HashMap;

11
jvm-packages/xgboost4j-demo/src/main/java/org/dmlc/xgboost4j/demo/PredictFirstNtree.java → jvm-packages/xgboost4j-demo/src/main/java/ml/dmlc/xgboost4j/demo/PredictFirstNtree.java
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@ -13,13 +13,16 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j.demo;
import org.dmlc.xgboost4j.*;
import org.dmlc.xgboost4j.demo.util.CustomEval;
package ml.dmlc.xgboost4j.demo;
import java.util.HashMap;
import ml.dmlc.xgboost4j.Booster;
import ml.dmlc.xgboost4j.DMatrix;
import ml.dmlc.xgboost4j.XGBoost;
import ml.dmlc.xgboost4j.XGBoostError;
import ml.dmlc.xgboost4j.demo.util.CustomEval;
/**
* predict first ntree
*

9
jvm-packages/xgboost4j-demo/src/main/java/org/dmlc/xgboost4j/demo/PredictLeafIndices.java → jvm-packages/xgboost4j-demo/src/main/java/ml/dmlc/xgboost4j/demo/PredictLeafIndices.java
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@ -13,13 +13,16 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j.demo;
import org.dmlc.xgboost4j.*;
package ml.dmlc.xgboost4j.demo;
import java.util.Arrays;
import java.util.HashMap;
import ml.dmlc.xgboost4j.Booster;
import ml.dmlc.xgboost4j.DMatrix;
import ml.dmlc.xgboost4j.XGBoost;
import ml.dmlc.xgboost4j.XGBoostError;
/**
* predict leaf indices
*

8
jvm-packages/xgboost4j-demo/src/main/java/org/dmlc/xgboost4j/demo/util/CustomEval.java → jvm-packages/xgboost4j-demo/src/main/java/ml/dmlc/xgboost4j/demo/util/CustomEval.java
View File

@ -13,13 +13,13 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j.demo.util;
package ml.dmlc.xgboost4j.demo.util;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.dmlc.xgboost4j.DMatrix;
import org.dmlc.xgboost4j.IEvaluation;
import org.dmlc.xgboost4j.XGBoostError;
import ml.dmlc.xgboost4j.DMatrix;
import ml.dmlc.xgboost4j.IEvaluation;
import ml.dmlc.xgboost4j.XGBoostError;
/**
* a util evaluation class for examples

2
jvm-packages/xgboost4j-demo/src/main/java/org/dmlc/xgboost4j/demo/util/DataLoader.java → jvm-packages/xgboost4j-demo/src/main/java/ml/dmlc/xgboost4j/demo/util/DataLoader.java
View File

@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j.demo.util;
package ml.dmlc.xgboost4j.demo.util;
import org.apache.commons.lang3.ArrayUtils;

2
jvm-packages/xgboost4j/src/main/java/org/dmlc/xgboost4j/Booster.java → jvm-packages/xgboost4j/src/main/java/ml/dmlc/xgboost4j/Booster.java
View File

@ -1,4 +1,4 @@
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
import java.io.IOException;
import java.util.Map;

2
jvm-packages/xgboost4j/src/main/java/org/dmlc/xgboost4j/DMatrix.java → jvm-packages/xgboost4j/src/main/java/ml/dmlc/xgboost4j/DMatrix.java
View File

@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;

2
jvm-packages/xgboost4j/src/main/java/org/dmlc/xgboost4j/IEvaluation.java → jvm-packages/xgboost4j/src/main/java/ml/dmlc/xgboost4j/IEvaluation.java
View File

@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
/**
* interface for customized evaluation

2
jvm-packages/xgboost4j/src/main/java/org/dmlc/xgboost4j/IObjective.java → jvm-packages/xgboost4j/src/main/java/ml/dmlc/xgboost4j/IObjective.java
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@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
import java.util.List;

2
jvm-packages/xgboost4j/src/main/java/org/dmlc/xgboost4j/JNIErrorHandle.java → jvm-packages/xgboost4j/src/main/java/ml/dmlc/xgboost4j/JNIErrorHandle.java
View File

@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;

2
jvm-packages/xgboost4j/src/main/java/org/dmlc/xgboost4j/JavaBoosterImpl.java → jvm-packages/xgboost4j/src/main/java/ml/dmlc/xgboost4j/JavaBoosterImpl.java
View File

@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;

2
jvm-packages/xgboost4j/src/main/java/org/dmlc/xgboost4j/NativeLibLoader.java → jvm-packages/xgboost4j/src/main/java/ml/dmlc/xgboost4j/NativeLibLoader.java
View File

@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;

2
jvm-packages/xgboost4j/src/main/java/org/dmlc/xgboost4j/XGBoost.java → jvm-packages/xgboost4j/src/main/java/ml/dmlc/xgboost4j/XGBoost.java
View File

@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;

2
jvm-packages/xgboost4j/src/main/java/org/dmlc/xgboost4j/XGBoostError.java → jvm-packages/xgboost4j/src/main/java/ml/dmlc/xgboost4j/XGBoostError.java
View File

@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
/**
* custom error class for xgboost

2
jvm-packages/xgboost4j/src/main/java/org/dmlc/xgboost4j/XgboostJNI.java → jvm-packages/xgboost4j/src/main/java/ml/dmlc/xgboost4j/XgboostJNI.java
View File

@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
/**
* xgboost jni wrapper functions for xgboost_wrapper.h

9
jvm-packages/xgboost4j/src/main/scala/org/dmlc/xgboost4j/scala/Booster.scala → jvm-packages/xgboost4j/src/main/scala/ml/dmlc/xgboost4j/scala/Booster.scala
View File

@ -14,13 +14,14 @@
limitations under the License.
*/
package org.dmlc.xgboost4j.scala
package ml.dmlc.xgboost4j.scala
import java.io.IOException
import scala.collection.mutable
import org.dmlc.xgboost4j.{IEvaluation, IObjective, XGBoostError}
import ml.dmlc.xgboost4j.XGBoostError
trait Booster {
@ -58,7 +59,7 @@ trait Booster {
* @param obj customized objective class
*/
@throws(classOf[XGBoostError])
def update(dtrain: DMatrix, obj: IObjective)
def update(dtrain: DMatrix, obj: ObjectiveTrait)
/**
* update with give grad and hess
@ -90,7 +91,7 @@ trait Booster {
* @return eval information
*/
@throws(classOf[XGBoostError])
def evalSet(evalMatrixs: Array[DMatrix], evalNames: Array[String], eval: IEvaluation): String
def evalSet(evalMatrixs: Array[DMatrix], evalNames: Array[String], eval: EvalTrait): String
/**
* Predict with data

4
jvm-packages/xgboost4j/src/main/scala/org/dmlc/xgboost4j/scala/DMatrix.scala → jvm-packages/xgboost4j/src/main/scala/ml/dmlc/xgboost4j/scala/DMatrix.scala
View File

@ -14,9 +14,9 @@
limitations under the License.
*/
package org.dmlc.xgboost4j.scala
package ml.dmlc.xgboost4j.scala
import org.dmlc.xgboost4j.{DMatrix => JDMatrix, XGBoostError}
import ml.dmlc.xgboost4j.{DMatrix => JDMatrix, XGBoostError}
class DMatrix private(private[scala] val jDMatrix: JDMatrix) {

4
jvm-packages/xgboost4j/src/main/scala/org/dmlc/xgboost4j/scala/EvalTrait.scala → jvm-packages/xgboost4j/src/main/scala/ml/dmlc/xgboost4j/scala/EvalTrait.scala
View File

@ -14,9 +14,9 @@
limitations under the License.
*/
package org.dmlc.xgboost4j.scala
package ml.dmlc.xgboost4j.scala
import org.dmlc.xgboost4j.IEvaluation
import ml.dmlc.xgboost4j.IEvaluation
trait EvalTrait extends IEvaluation {

4
jvm-packages/xgboost4j/src/main/scala/org/dmlc/xgboost4j/scala/ObjectiveTrait.scala → jvm-packages/xgboost4j/src/main/scala/ml/dmlc/xgboost4j/scala/ObjectiveTrait.scala
View File

@ -14,9 +14,9 @@
limitations under the License.
*/
package org.dmlc.xgboost4j.scala
package ml.dmlc.xgboost4j.scala
import org.dmlc.xgboost4j.IObjective
import ml.dmlc.xgboost4j.IObjective
trait ObjectiveTrait extends IObjective {
/**

8
jvm-packages/xgboost4j/src/main/scala/org/dmlc/xgboost4j/scala/ScalaBoosterImpl.scala → jvm-packages/xgboost4j/src/main/scala/ml/dmlc/xgboost4j/scala/ScalaBoosterImpl.scala
View File

@ -14,12 +14,12 @@
limitations under the License.
*/
package org.dmlc.xgboost4j.scala
package ml.dmlc.xgboost4j.scala
import scala.collection.JavaConverters._
import scala.collection.mutable
import org.dmlc.xgboost4j.{Booster => JBooster, IEvaluation, IObjective}
import ml.dmlc.xgboost4j.{Booster => JBooster, IEvaluation, IObjective}
private[scala] class ScalaBoosterImpl private[xgboost4j](booster: JBooster) extends Booster {
@ -31,7 +31,7 @@ private[scala] class ScalaBoosterImpl private[xgboost4j](booster: JBooster) exte
booster.update(dtrain.jDMatrix, iter)
}
override def update(dtrain: DMatrix, obj: IObjective): Unit = {
override def update(dtrain: DMatrix, obj: ObjectiveTrait): Unit = {
booster.update(dtrain.jDMatrix, obj)
}
@ -51,7 +51,7 @@ private[scala] class ScalaBoosterImpl private[xgboost4j](booster: JBooster) exte
booster.evalSet(evalMatrixs.map(_.jDMatrix), evalNames, iter)
}
override def evalSet(evalMatrixs: Array[DMatrix], evalNames: Array[String], eval: IEvaluation):
override def evalSet(evalMatrixs: Array[DMatrix], evalNames: Array[String], eval: EvalTrait):
String = {
booster.evalSet(evalMatrixs.map(_.jDMatrix), evalNames, eval)
}

13
jvm-packages/xgboost4j/src/main/scala/org/dmlc/xgboost4j/scala/XGBoost.scala → jvm-packages/xgboost4j/src/main/scala/ml/dmlc/xgboost4j/scala/XGBoost.scala
View File

@ -14,15 +14,15 @@
limitations under the License.
*/
package org.dmlc.xgboost4j.scala
package ml.dmlc.xgboost4j.scala
import _root_.scala.collection.JavaConverters._
import org.dmlc.xgboost4j.{IEvaluation, IObjective, XGBoost => JXGBoost}
import ml.dmlc.xgboost4j.{XGBoost => JXGBoost}
object XGBoost {
def train(params: Map[String, AnyRef], dtrain: DMatrix, round: Int,
watches: Map[String, DMatrix], obj: IObjective, eval: IEvaluation): Booster = {
watches: Map[String, DMatrix], obj: ObjectiveTrait, eval: EvalTrait): Booster = {
val jWatches = watches.map{case (name, matrix) => (name, matrix.jDMatrix)}
val xgboostInJava = JXGBoost.train(params.asJava, dtrain.jDMatrix, round, jWatches.asJava,
obj, eval)
@ -35,10 +35,9 @@ object XGBoost {
round: Int,
nfold: Int,
metrics: Array[String],
obj: EvalTrait,
eval: ObjectiveTrait): Array[String] = {
JXGBoost.crossValiation(params.asJava, data.jDMatrix, round, nfold, metrics,
obj.asInstanceOf[IObjective], eval.asInstanceOf[IEvaluation])
obj: ObjectiveTrait,
eval: EvalTrait): Array[String] = {
JXGBoost.crossValiation(params.asJava, data.jDMatrix, round, nfold, metrics, obj, eval)
}
def initBoostModel(params: Map[String, AnyRef], dMatrixs: Array[DMatrix]): Booster = {

100
jvm-packages/xgboost4j/src/native/xgboost4j.cpp
View File

@ -24,7 +24,7 @@ void setHandle(JNIEnv *jenv, jlongArray jhandle, void* handle) {
jenv->SetLongArrayRegion(jhandle, 0, 1, (const jlong*) out);
}
JNIEXPORT jstring JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBGetLastError
JNIEXPORT jstring JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBGetLastError
(JNIEnv *jenv, jclass jcls) {
jstring jresult = 0 ;
const char* result = XGBGetLastError();
@ -32,7 +32,7 @@ JNIEXPORT jstring JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBGetLastError
return jresult;
}
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromFile
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromFile
(JNIEnv *jenv, jclass jcls, jstring jfname, jint jsilent, jlongArray jout) {
DMatrixHandle result;
const char* fname = jenv->GetStringUTFChars(jfname, 0);
@ -43,11 +43,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromFil
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixCreateFromCSR
* Signature: ([J[J[F)J
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromCSR
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromCSR
(JNIEnv *jenv, jclass jcls, jlongArray jindptr, jintArray jindices, jfloatArray jdata, jlongArray jout) {
DMatrixHandle result;
jlong* indptr = jenv->GetLongArrayElements(jindptr, 0);
@ -65,11 +65,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromCSR
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixCreateFromCSC
* Signature: ([J[J[F)J
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromCSC
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromCSC
(JNIEnv *jenv, jclass jcls, jlongArray jindptr, jintArray jindices, jfloatArray jdata, jlongArray jout) {
DMatrixHandle result;
jlong* indptr = jenv->GetLongArrayElements(jindptr, NULL);
@ -89,11 +89,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromCSC
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixCreateFromMat
* Signature: ([FIIF)J
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromMat
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromMat
(JNIEnv *jenv, jclass jcls, jfloatArray jdata, jint jnrow, jint jncol, jfloat jmiss, jlongArray jout) {
DMatrixHandle result;
jfloat* data = jenv->GetFloatArrayElements(jdata, 0);
@ -107,11 +107,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromMat
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixSliceDMatrix
* Signature: (J[I)J
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSliceDMatrix
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixSliceDMatrix
(JNIEnv *jenv, jclass jcls, jlong jhandle, jintArray jindexset, jlongArray jout) {
DMatrixHandle result;
DMatrixHandle handle = (DMatrixHandle) jhandle;
@ -128,11 +128,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSliceDMatrix
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixFree
* Signature: (J)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixFree
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixFree
(JNIEnv *jenv, jclass jcls, jlong jhandle) {
DMatrixHandle handle = (DMatrixHandle) jhandle;
int ret = XGDMatrixFree(handle);
@ -140,11 +140,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixFree
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixSaveBinary
* Signature: (JLjava/lang/String;I)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSaveBinary
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixSaveBinary
(JNIEnv *jenv, jclass jcls, jlong jhandle, jstring jfname, jint jsilent) {
DMatrixHandle handle = (DMatrixHandle) jhandle;
const char* fname = jenv->GetStringUTFChars(jfname, 0);
@ -154,11 +154,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSaveBinary
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixSetFloatInfo
* Signature: (JLjava/lang/String;[F)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetFloatInfo
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetFloatInfo
(JNIEnv *jenv, jclass jcls, jlong jhandle, jstring jfield, jfloatArray jarray) {
DMatrixHandle handle = (DMatrixHandle) jhandle;
const char* field = jenv->GetStringUTFChars(jfield, 0);
@ -173,11 +173,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetFloatInfo
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixSetUIntInfo
* Signature: (JLjava/lang/String;[I)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetUIntInfo
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetUIntInfo
(JNIEnv *jenv, jclass jcls, jlong jhandle, jstring jfield, jintArray jarray) {
DMatrixHandle handle = (DMatrixHandle) jhandle;
const char* field = jenv->GetStringUTFChars(jfield, 0);
@ -192,11 +192,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetUIntInfo
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixSetGroup
* Signature: (J[I)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetGroup
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetGroup
(JNIEnv * jenv, jclass jcls, jlong jhandle, jintArray jarray) {
DMatrixHandle handle = (DMatrixHandle) jhandle;
jint* array = jenv->GetIntArrayElements(jarray, NULL);
@ -208,11 +208,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetGroup
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixGetFloatInfo
* Signature: (JLjava/lang/String;)[F
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixGetFloatInfo
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixGetFloatInfo
(JNIEnv *jenv, jclass jcls, jlong jhandle, jstring jfield, jobjectArray jout) {
DMatrixHandle handle = (DMatrixHandle) jhandle;
const char* field = jenv->GetStringUTFChars(jfield, 0);
@ -230,11 +230,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixGetFloatInfo
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixGetUIntInfo
* Signature: (JLjava/lang/String;)[I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixGetUIntInfo
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixGetUIntInfo
(JNIEnv *jenv, jclass jcls, jlong jhandle, jstring jfield, jobjectArray jout) {
DMatrixHandle handle = (DMatrixHandle) jhandle;
const char* field = jenv->GetStringUTFChars(jfield, 0);
@ -251,11 +251,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixGetUIntInfo
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixNumRow
* Signature: (J)J
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixNumRow
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixNumRow
(JNIEnv *jenv, jclass jcls, jlong jhandle, jlongArray jout) {
DMatrixHandle handle = (DMatrixHandle) jhandle;
bst_ulong result[1];
@ -265,11 +265,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixNumRow
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterCreate
* Signature: ([J)J
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterCreate
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterCreate
(JNIEnv *jenv, jclass jcls, jlongArray jhandles, jlongArray jout) {
DMatrixHandle* handles;
bst_ulong len = 0;
@ -298,11 +298,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterCreate
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterFree
* Signature: (J)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterFree
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterFree
(JNIEnv *jenv, jclass jcls, jlong jhandle) {
BoosterHandle handle = (BoosterHandle) jhandle;
return XGBoosterFree(handle);
@ -310,11 +310,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterFree
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterSetParam
* Signature: (JLjava/lang/String;Ljava/lang/String;)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterSetParam
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterSetParam
(JNIEnv *jenv, jclass jcls, jlong jhandle, jstring jname, jstring jvalue) {
BoosterHandle handle = (BoosterHandle) jhandle;
const char* name = jenv->GetStringUTFChars(jname, 0);
@ -327,11 +327,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterSetParam
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterUpdateOneIter
* Signature: (JIJ)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterUpdateOneIter
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterUpdateOneIter
(JNIEnv *jenv, jclass jcls, jlong jhandle, jint jiter, jlong jdtrain) {
BoosterHandle handle = (BoosterHandle) jhandle;
DMatrixHandle dtrain = (DMatrixHandle) jdtrain;
@ -339,11 +339,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterUpdateOneIter
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterBoostOneIter
* Signature: (JJ[F[F)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterBoostOneIter
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterBoostOneIter
(JNIEnv *jenv, jclass jcls, jlong jhandle, jlong jdtrain, jfloatArray jgrad, jfloatArray jhess) {
BoosterHandle handle = (BoosterHandle) jhandle;
DMatrixHandle dtrain = (DMatrixHandle) jdtrain;
@ -358,11 +358,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterBoostOneIter
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterEvalOneIter
* Signature: (JI[J[Ljava/lang/String;)Ljava/lang/String;
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterEvalOneIter
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterEvalOneIter
(JNIEnv *jenv, jclass jcls, jlong jhandle, jint jiter, jlongArray jdmats, jobjectArray jevnames, jobjectArray jout) {
BoosterHandle handle = (BoosterHandle) jhandle;
DMatrixHandle* dmats = 0;
@ -406,11 +406,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterEvalOneIter
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterPredict
* Signature: (JJIJ)[F
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterPredict
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterPredict
(JNIEnv *jenv, jclass jcls, jlong jhandle, jlong jdmat, jint joption_mask, jint jntree_limit, jobjectArray jout) {
BoosterHandle handle = (BoosterHandle) jhandle;
DMatrixHandle dmat = (DMatrixHandle) jdmat;
@ -426,11 +426,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterPredict
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterLoadModel
* Signature: (JLjava/lang/String;)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterLoadModel
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterLoadModel
(JNIEnv *jenv, jclass jcls, jlong jhandle, jstring jfname) {
BoosterHandle handle = (BoosterHandle) jhandle;
const char* fname = jenv->GetStringUTFChars(jfname, 0);
@ -441,11 +441,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterLoadModel
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterSaveModel
* Signature: (JLjava/lang/String;)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterSaveModel
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterSaveModel
(JNIEnv *jenv, jclass jcls, jlong jhandle, jstring jfname) {
BoosterHandle handle = (BoosterHandle) jhandle;
const char* fname = jenv->GetStringUTFChars(jfname, 0);
@ -457,11 +457,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterSaveModel
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterLoadModelFromBuffer
* Signature: (JJJ)V
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterLoadModelFromBuffer
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterLoadModelFromBuffer
(JNIEnv *jenv, jclass jcls, jlong jhandle, jlong jbuf, jlong jlen) {
BoosterHandle handle = (BoosterHandle) jhandle;
void *buf = (void*) jbuf;
@ -469,11 +469,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterLoadModelFrom
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterGetModelRaw
* Signature: (J)Ljava/lang/String;
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterGetModelRaw
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterGetModelRaw
(JNIEnv * jenv, jclass jcls, jlong jhandle, jobjectArray jout) {
BoosterHandle handle = (BoosterHandle) jhandle;
bst_ulong len = 0;
@ -488,11 +488,11 @@ JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterGetModelRaw
}
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterDumpModel
* Signature: (JLjava/lang/String;I)[Ljava/lang/String;
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterDumpModel
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterDumpModel
(JNIEnv *jenv, jclass jcls, jlong jhandle, jstring jfmap, jint jwith_stats, jobjectArray jout) {
BoosterHandle handle = (BoosterHandle) jhandle;
const char *fmap = jenv->GetStringUTFChars(jfmap, 0);

112
jvm-packages/xgboost4j/src/native/xgboost4j.h
View File

@ -1,218 +1,218 @@
/* DO NOT EDIT THIS FILE - it is machine generated */
#include <jni.h>
/* Header for class org_dmlc_xgboost4j_XgboostJNI */
/* Header for class ml_dmlc_xgboost4j_XgboostJNI */
#ifndef _Included_org_dmlc_xgboost4j_XgboostJNI
#define _Included_org_dmlc_xgboost4j_XgboostJNI
#ifndef _Included_ml_dmlc_xgboost4j_XgboostJNI
#define _Included_ml_dmlc_xgboost4j_XgboostJNI
#ifdef __cplusplus
extern "C" {
#endif
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBGetLastError
* Signature: ()Ljava/lang/String;
*/
JNIEXPORT jstring JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBGetLastError
JNIEXPORT jstring JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBGetLastError
(JNIEnv *, jclass);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixCreateFromFile
* Signature: (Ljava/lang/String;I[J)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromFile
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromFile
(JNIEnv *, jclass, jstring, jint, jlongArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixCreateFromCSR
* Signature: ([J[I[F[J)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromCSR
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromCSR
(JNIEnv *, jclass, jlongArray, jintArray, jfloatArray, jlongArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixCreateFromCSC
* Signature: ([J[I[F[J)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromCSC
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromCSC
(JNIEnv *, jclass, jlongArray, jintArray, jfloatArray, jlongArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixCreateFromMat
* Signature: ([FIIF[J)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromMat
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixCreateFromMat
(JNIEnv *, jclass, jfloatArray, jint, jint, jfloat, jlongArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixSliceDMatrix
* Signature: (J[I[J)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSliceDMatrix
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixSliceDMatrix
(JNIEnv *, jclass, jlong, jintArray, jlongArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixFree
* Signature: (J)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixFree
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixFree
(JNIEnv *, jclass, jlong);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixSaveBinary
* Signature: (JLjava/lang/String;I)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSaveBinary
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixSaveBinary
(JNIEnv *, jclass, jlong, jstring, jint);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixSetFloatInfo
* Signature: (JLjava/lang/String;[F)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetFloatInfo
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetFloatInfo
(JNIEnv *, jclass, jlong, jstring, jfloatArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixSetUIntInfo
* Signature: (JLjava/lang/String;[I)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetUIntInfo
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetUIntInfo
(JNIEnv *, jclass, jlong, jstring, jintArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixSetGroup
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetGroup
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixSetGroup
(JNIEnv *, jclass, jlong, jintArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixGetFloatInfo
* Signature: (JLjava/lang/String;[[F)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixGetFloatInfo
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixGetFloatInfo
(JNIEnv *, jclass, jlong, jstring, jobjectArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixGetUIntInfo
* Signature: (JLjava/lang/String;[[I)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixGetUIntInfo
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixGetUIntInfo
(JNIEnv *, jclass, jlong, jstring, jobjectArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGDMatrixNumRow
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGDMatrixNumRow
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGDMatrixNumRow
(JNIEnv *, jclass, jlong, jlongArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterCreate
* Signature: ([J[J)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterCreate
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterCreate
(JNIEnv *, jclass, jlongArray, jlongArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterFree
* Signature: (J)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterFree
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterFree
(JNIEnv *, jclass, jlong);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterSetParam
* Signature: (JLjava/lang/String;Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterSetParam
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterSetParam
(JNIEnv *, jclass, jlong, jstring, jstring);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterUpdateOneIter
* Signature: (JIJ)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterUpdateOneIter
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterUpdateOneIter
(JNIEnv *, jclass, jlong, jint, jlong);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterBoostOneIter
* Signature: (JJ[F[F)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterBoostOneIter
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterBoostOneIter
(JNIEnv *, jclass, jlong, jlong, jfloatArray, jfloatArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterEvalOneIter
* Signature: (JI[J[Ljava/lang/String;[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterEvalOneIter
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterEvalOneIter
(JNIEnv *, jclass, jlong, jint, jlongArray, jobjectArray, jobjectArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterPredict
* Signature: (JJIJ[[F)I
* Signature: (JJII[[F)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterPredict
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterPredict
(JNIEnv *, jclass, jlong, jlong, jint, jint, jobjectArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterLoadModel
* Signature: (JLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterLoadModel
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterLoadModel
(JNIEnv *, jclass, jlong, jstring);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterSaveModel
* Signature: (JLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterSaveModel
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterSaveModel
(JNIEnv *, jclass, jlong, jstring);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterLoadModelFromBuffer
* Signature: (JJJ)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterLoadModelFromBuffer
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterLoadModelFromBuffer
(JNIEnv *, jclass, jlong, jlong, jlong);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterGetModelRaw
* Signature: (J[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterGetModelRaw
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterGetModelRaw
(JNIEnv *, jclass, jlong, jobjectArray);
/*
* Class: org_dmlc_xgboost4j_XgboostJNI
* Class: ml_dmlc_xgboost4j_XgboostJNI
* Method: XGBoosterDumpModel
* Signature: (JLjava/lang/String;I[[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL Java_org_dmlc_xgboost4j_XgboostJNI_XGBoosterDumpModel
JNIEXPORT jint JNICALL Java_ml_dmlc_xgboost4j_XgboostJNI_XGBoosterDumpModel
(JNIEnv *, jclass, jlong, jstring, jint, jobjectArray);
#ifdef __cplusplus

13
jvm-packages/xgboost4j/src/test/java/org/dmlc/xgboost4j/BoosterImplTest.java → jvm-packages/xgboost4j/src/test/java/ml/dmlc/xgboost4j/BoosterImplTest.java
View File

@ -13,7 +13,7 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
import junit.framework.TestCase;
import org.apache.commons.logging.Log;
@ -21,7 +21,6 @@ import org.apache.commons.logging.LogFactory;
import org.junit.Test;
import java.util.*;
import java.util.Map.Entry;
/**
* test cases for Booster
@ -43,7 +42,7 @@ public class BoosterImplTest {
}
@Override
public float eval(float[][] predicts, org.dmlc.xgboost4j.DMatrix dmat) {
public float eval(float[][] predicts, DMatrix dmat) {
float error = 0f;
float[] labels;
try {
@ -67,8 +66,8 @@ public class BoosterImplTest {
@Test
public void testBoosterBasic() throws XGBoostError {
org.dmlc.xgboost4j.DMatrix trainMat = new org.dmlc.xgboost4j.DMatrix("../../demo/data/agaricus.txt.train");
org.dmlc.xgboost4j.DMatrix testMat = new org.dmlc.xgboost4j.DMatrix("../../demo/data/agaricus.txt.test");
DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train");
DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test");
//set params
Map<String, Object> paramMap = new HashMap<String, Object>() {
@ -81,7 +80,7 @@ public class BoosterImplTest {
};
//set watchList
HashMap<String, org.dmlc.xgboost4j.DMatrix> watches = new HashMap<>();
HashMap<String, DMatrix> watches = new HashMap<>();
watches.put("train", trainMat);
watches.put("test", testMat);
@ -112,7 +111,7 @@ public class BoosterImplTest {
@Test
public void testCV() throws XGBoostError {
//load train mat
org.dmlc.xgboost4j.DMatrix trainMat = new org.dmlc.xgboost4j.DMatrix("../../demo/data/agaricus.txt.train");
DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train");
//set params
Map<String, Object> param = new HashMap<String, Object>() {

9
jvm-packages/xgboost4j/src/test/java/org/dmlc/xgboost4j/DMatrixTest.java → jvm-packages/xgboost4j/src/test/java/ml/dmlc/xgboost4j/DMatrixTest.java
View File

@ -13,10 +13,9 @@
See the License for the specific language governing permissions and
limitations under the License.
*/
package org.dmlc.xgboost4j;
package ml.dmlc.xgboost4j;
import junit.framework.TestCase;
import org.dmlc.xgboost4j.*;
import org.junit.Test;
import java.util.Arrays;
@ -32,7 +31,7 @@ public class DMatrixTest {
@Test
public void testCreateFromFile() throws XGBoostError {
//create DMatrix from file
org.dmlc.xgboost4j.DMatrix dmat = new org.dmlc.xgboost4j.DMatrix("../../demo/data/agaricus.txt.test");
DMatrix dmat = new DMatrix("../../demo/data/agaricus.txt.test");
//get label
float[] labels = dmat.getLabel();
//check length
@ -56,7 +55,7 @@ public class DMatrixTest {
float[] data = new float[]{1, 2, 3, 4, 2, 3, 5, 3, 1, 2, 5};
int[] colIndex = new int[]{0, 2, 3, 0, 2, 3, 4, 0, 1, 2, 3};
long[] rowHeaders = new long[]{0, 3, 7, 11};
org.dmlc.xgboost4j.DMatrix dmat1 = new org.dmlc.xgboost4j.DMatrix(rowHeaders, colIndex, data, org.dmlc.xgboost4j.DMatrix.SparseType.CSR);
DMatrix dmat1 = new DMatrix(rowHeaders, colIndex, data, DMatrix.SparseType.CSR);
//check row num
System.out.println(dmat1.rowNum());
TestCase.assertTrue(dmat1.rowNum() == 3);
@ -85,7 +84,7 @@ public class DMatrixTest {
label0[i] = random.nextFloat();
}
org.dmlc.xgboost4j.DMatrix dmat0 = new org.dmlc.xgboost4j.DMatrix(data0, nrow, ncol);
DMatrix dmat0 = new DMatrix(data0, nrow, ncol);
dmat0.setLabel(label0);
//check

2
tests/travis/run_test.sh
View File

@ -75,7 +75,7 @@ if [ ${TASK} == "java_test" ]; then
set -e
make jvm-packages
cd jvm-packages
./create_wrap.sh
./create_jni.sh
mvn clean install -DskipTests=true
mvn test
fi