Support column-wise data split with in-memory inputs (#9628)
--------- Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
This commit is contained in:
@@ -1,4 +1,5 @@
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import os
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import sys
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import tempfile
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import numpy as np
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@@ -9,6 +10,7 @@ from scipy.sparse import csr_matrix, rand
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import xgboost as xgb
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from xgboost import testing as tm
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from xgboost.core import DataSplitMode
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from xgboost.testing.data import np_dtypes
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rng = np.random.RandomState(1)
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@@ -467,3 +469,97 @@ class TestDMatrix:
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m0 = xgb.DMatrix(orig)
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m1 = xgb.DMatrix(x)
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assert tm.predictor_equal(m0, m1)
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class TestDMatrixColumnSplit:
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def test_numpy(self):
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def verify_numpy():
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data = np.random.randn(5, 5)
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dm = xgb.DMatrix(data, data_split_mode=DataSplitMode.COL)
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assert dm.num_row() == 5
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assert dm.num_col() == 5 * xgb.collective.get_world_size()
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assert dm.feature_names is None
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assert dm.feature_types is None
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tm.run_with_rabit(world_size=3, test_fn=verify_numpy)
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def test_numpy_feature_names(self):
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def verify_numpy_feature_names():
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world_size = xgb.collective.get_world_size()
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data = np.random.randn(5, 5)
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feature_names = [f'feature{x}' for x in range(5)]
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feature_types = ['float'] * 5
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dm = xgb.DMatrix(data, feature_names=feature_names, feature_types=feature_types,
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data_split_mode=DataSplitMode.COL)
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assert dm.num_row() == 5
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assert dm.num_col() == 5 * world_size
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assert len(dm.feature_names) == 5 * world_size
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assert len(dm.feature_types) == 5 * world_size
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tm.run_with_rabit(world_size=3, test_fn=verify_numpy_feature_names)
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def test_csr(self):
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def verify_csr():
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indptr = np.array([0, 2, 3, 6])
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indices = np.array([0, 2, 2, 0, 1, 2])
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data = np.array([1, 2, 3, 4, 5, 6])
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X = scipy.sparse.csr_matrix((data, indices, indptr), shape=(3, 3))
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dtrain = xgb.DMatrix(X, data_split_mode=DataSplitMode.COL)
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assert dtrain.num_row() == 3
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assert dtrain.num_col() == 3 * xgb.collective.get_world_size()
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tm.run_with_rabit(world_size=3, test_fn=verify_csr)
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def test_csc(self):
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def verify_csc():
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row = np.array([0, 2, 2, 0, 1, 2])
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col = np.array([0, 0, 1, 2, 2, 2])
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data = np.array([1, 2, 3, 4, 5, 6])
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X = scipy.sparse.csc_matrix((data, (row, col)), shape=(3, 3))
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dtrain = xgb.DMatrix(X, data_split_mode=DataSplitMode.COL)
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assert dtrain.num_row() == 3
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assert dtrain.num_col() == 3 * xgb.collective.get_world_size()
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tm.run_with_rabit(world_size=3, test_fn=verify_csc)
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def test_coo(self):
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def verify_coo():
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row = np.array([0, 2, 2, 0, 1, 2])
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col = np.array([0, 0, 1, 2, 2, 2])
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data = np.array([1, 2, 3, 4, 5, 6])
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X = scipy.sparse.coo_matrix((data, (row, col)), shape=(3, 3))
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dtrain = xgb.DMatrix(X, data_split_mode=DataSplitMode.COL)
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assert dtrain.num_row() == 3
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assert dtrain.num_col() == 3 * xgb.collective.get_world_size()
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tm.run_with_rabit(world_size=3, test_fn=verify_coo)
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def test_list(self):
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def verify_list():
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data = [
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[1, 2, 3, 4, 5],
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[6, 7, 8, 9, 10],
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[11, 12, 13, 14, 15],
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[16, 17, 18, 19, 20],
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[21, 22, 23, 24, 25]
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]
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dm = xgb.DMatrix(data, data_split_mode=DataSplitMode.COL)
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assert dm.num_row() == 5
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assert dm.num_col() == 5 * xgb.collective.get_world_size()
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tm.run_with_rabit(world_size=3, test_fn=verify_list)
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def test_tuple(self):
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def verify_tuple():
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data = (
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(1, 2, 3, 4, 5),
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(6, 7, 8, 9, 10),
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(11, 12, 13, 14, 15),
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(16, 17, 18, 19, 20),
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(21, 22, 23, 24, 25)
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)
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dm = xgb.DMatrix(data, data_split_mode=DataSplitMode.COL)
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assert dm.num_row() == 5
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assert dm.num_col() == 5 * xgb.collective.get_world_size()
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tm.run_with_rabit(world_size=3, test_fn=verify_tuple)
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