Squashed 'subtree/rabit/' content from commit c7282ac

git-subtree-dir: subtree/rabit
git-subtree-split: c7282acb2a
This commit is contained in:
tqchen
2015-01-18 21:08:17 -08:00
commit d87691ec60
68 changed files with 9081 additions and 0 deletions

4
test/.gitignore vendored Normal file
View File

@@ -0,0 +1,4 @@
*.mpi
test_*
*_test
*_recover

41
test/Makefile Normal file
View File

@@ -0,0 +1,41 @@
export CC = gcc
export CXX = g++
export MPICXX = mpicxx
export LDFLAGS= -pthread -lm -lrt -L../lib
export CFLAGS = -Wall -O3 -msse2 -Wno-unknown-pragmas -fPIC -I../include -std=c++11
# specify tensor path
BIN = speed_test model_recover local_recover lazy_recover
OBJ = $(RABIT_OBJ) speed_test.o model_recover.o local_recover.o lazy_recover.o
MPIBIN = speed_test.mpi
.PHONY: clean all lib mpi
all: $(BIN) $(MPIBIN)
lib:
cd ..;make;cd -
mpi:
cd ..;make mpi;cd -
# programs
speed_test.o: speed_test.cc ../include/*.h lib mpi
model_recover.o: model_recover.cc ../include/*.h lib
local_recover.o: local_recover.cc ../include/*.h lib
lazy_recover.o: lazy_recover.cc ../include/*.h lib
# we can link against MPI version to get use MPI
speed_test: speed_test.o $(RABIT_OBJ)
speed_test.mpi: speed_test.o $(MPIOBJ)
model_recover: model_recover.o $(RABIT_OBJ)
local_recover: local_recover.o $(RABIT_OBJ)
lazy_recover: lazy_recover.o $(RABIT_OBJ)
$(BIN) :
$(CXX) $(CFLAGS) -o $@ $(filter %.cpp %.o %.c %.cc, $^) $(LDFLAGS) -lrabit_mock
$(OBJ) :
$(CXX) -c $(CFLAGS) -o $@ $(firstword $(filter %.cpp %.c %.cc, $^) )
$(MPIBIN) :
$(MPICXX) $(CFLAGS) -o $@ $(filter %.cpp %.o %.c %.cc, $^) $(LDFLAGS) -lrabit_mpi
clean:
$(RM) $(OBJ) $(BIN) $(MPIBIN) $(MPIOBJ) *~ ../src/*~

18
test/README.md Normal file
View File

@@ -0,0 +1,18 @@
Testcases of Rabit
====
This folder contains internal testcases to test correctness and efficiency of rabit API
The example running scripts for testcases are given by test.mk
* type ```make -f test.mk testcasename``` to run certain testcase
Helper Scripts
====
* test.mk contains Makefile documentation of all testcases
* keepalive.sh helper bash to restart a program when it dies abnormally
List of Programs
====
* speed_test: test the running speed of rabit API
* test_local_recover: test recovery of local state when error happens
* test_model_recover: test recovery of global state when error happens

126
test/lazy_recover.cc Normal file
View File

@@ -0,0 +1,126 @@
// this is a test case to test whether rabit can recover model when
// facing an exception
#include <rabit.h>
#include <rabit/utils.h>
#include <cstdio>
#include <cstdlib>
#include <cmath>
using namespace rabit;
// dummy model
class Model : public rabit::ISerializable {
public:
// iterations
std::vector<float> data;
// load from stream
virtual void Load(rabit::IStream &fi) {
fi.Read(&data);
}
/*! \brief save the model to the stream */
virtual void Save(rabit::IStream &fo) const {
fo.Write(data);
}
virtual void InitModel(size_t n) {
data.clear();
data.resize(n, 1.0f);
}
};
inline void TestMax(Model *model, int ntrial, int iter) {
int rank = rabit::GetRank();
int nproc = rabit::GetWorldSize();
const int z = iter + 111;
std::vector<float> ndata(model->data.size());
for (size_t i = 0; i < ndata.size(); ++i) {
ndata[i] = (i * (rank+1)) % z + model->data[i];
}
rabit::Allreduce<op::Max>(&ndata[0], ndata.size());
for (size_t i = 0; i < ndata.size(); ++i) {
float rmax = (i * 1) % z + model->data[i];
for (int r = 0; r < nproc; ++r) {
rmax = std::max(rmax, (float)((i * (r+1)) % z) + model->data[i]);
}
utils::Check(rmax == ndata[i], "[%d] TestMax check failurem i=%lu, rmax=%f, ndata=%f", rank, i, rmax, ndata[i]);
}
}
inline void TestSum(Model *model, int ntrial, int iter) {
int rank = rabit::GetRank();
int nproc = rabit::GetWorldSize();
const int z = 131 + iter;
std::vector<float> ndata(model->data.size());
for (size_t i = 0; i < ndata.size(); ++i) {
ndata[i] = (i * (rank+1)) % z + model->data[i];
}
Allreduce<op::Sum>(&ndata[0], ndata.size());
for (size_t i = 0; i < ndata.size(); ++i) {
float rsum = model->data[i] * nproc;
for (int r = 0; r < nproc; ++r) {
rsum += (float)((i * (r+1)) % z);
}
utils::Check(fabsf(rsum - ndata[i]) < 1e-5 ,
"[%d] TestSum check failure, local=%g, allreduce=%g", rank, rsum, ndata[i]);
}
model->data = ndata;
}
inline void TestBcast(size_t n, int root, int ntrial, int iter) {
int rank = rabit::GetRank();
std::string s; s.resize(n);
for (size_t i = 0; i < n; ++i) {
s[i] = char(i % 126 + 1);
}
std::string res;
if (root == rank) {
res = s;
rabit::Broadcast(&res, root);
} else {
rabit::Broadcast(&res, root);
}
utils::Check(res == s, "[%d] TestBcast fail", rank);
}
int main(int argc, char *argv[]) {
if (argc < 3) {
printf("Usage: <ndata> <config>\n");
return 0;
}
int n = atoi(argv[1]);
rabit::Init(argc, argv);
int rank = rabit::GetRank();
int nproc = rabit::GetWorldSize();
std::string name = rabit::GetProcessorName();
Model model;
srand(0);
int ntrial = 0;
for (int i = 1; i < argc; ++i) {
int n;
if (sscanf(argv[i], "rabit_num_trial=%d", &n) == 1) ntrial = n;
}
int iter = rabit::LoadCheckPoint(&model);
if (iter == 0) {
model.InitModel(n);
printf("[%d] reload-trail=%d, init iter=%d\n", rank, ntrial, iter);
} else {
printf("[%d] reload-trail=%d, init iter=%d\n", rank, ntrial, iter);
}
for (int r = iter; r < 3; ++r) {
TestMax(&model, ntrial, r);
printf("[%d] !!!TestMax pass, iter=%d\n", rank, r);
int step = std::max(nproc / 3, 1);
for (int i = 0; i < nproc; i += step) {
TestBcast(n, i, ntrial, r);
}
printf("[%d] !!!TestBcast pass, iter=%d\n", rank, r);
TestSum(&model, ntrial, r);
printf("[%d] !!!TestSum pass, iter=%d\n", rank, r);
rabit::LazyCheckPoint(&model);
printf("[%d] !!!CheckPont pass, iter=%d\n", rank, r);
}
rabit::Finalize();
return 0;
}

138
test/local_recover.cc Normal file
View File

@@ -0,0 +1,138 @@
// this is a test case to test whether rabit can recover model when
// facing an exception
#include <rabit.h>
#include <rabit/utils.h>
#include <cstdio>
#include <cstdlib>
#include <cmath>
using namespace rabit;
// dummy model
class Model : public rabit::ISerializable {
public:
// iterations
std::vector<float> data;
// load from stream
virtual void Load(rabit::IStream &fi) {
fi.Read(&data);
}
/*! \brief save the model to the stream */
virtual void Save(rabit::IStream &fo) const {
fo.Write(data);
}
virtual void InitModel(size_t n, float v) {
data.clear();
data.resize(n, v);
}
};
inline void TestMax(Model *model, Model *local, int ntrial, int iter) {
int rank = rabit::GetRank();
int nproc = rabit::GetWorldSize();
const int z = iter + 111;
std::vector<float> ndata(model->data.size());
rabit::Allreduce<op::Max>(&ndata[0], ndata.size(),
[&]() {
// use lambda expression to prepare the data
for (size_t i = 0; i < ndata.size(); ++i) {
ndata[i] = (i * (rank+1)) % z + local->data[i];
}
});
for (size_t i = 0; i < ndata.size(); ++i) {
float rmax = (i * 1) % z + model->data[i];
for (int r = 0; r < nproc; ++r) {
rmax = std::max(rmax, (float)((i * (r+1)) % z) + model->data[i] + r);
}
utils::Check(rmax == ndata[i], "[%d] TestMax check failure", rank);
}
model->data = ndata;
local->data = ndata;
for (size_t i = 0; i < ndata.size(); ++i) {
local->data[i] = ndata[i] + rank;
}
}
inline void TestSum(Model *model, Model *local, int ntrial, int iter) {
int rank = rabit::GetRank();
int nproc = rabit::GetWorldSize();
const int z = 131 + iter;
std::vector<float> ndata(model->data.size());
for (size_t i = 0; i < ndata.size(); ++i) {
ndata[i] = (i * (rank+1)) % z + local->data[i];
}
Allreduce<op::Sum>(&ndata[0], ndata.size());
for (size_t i = 0; i < ndata.size(); ++i) {
float rsum = 0.0f;
for (int r = 0; r < nproc; ++r) {
rsum += (float)((i * (r+1)) % z) + model->data[i] + r;
}
utils::Check(fabsf(rsum - ndata[i]) < 1e-5 ,
"[%d] TestSum check failure, local=%g, allreduce=%g", rank, rsum, ndata[i]);
}
model->data = ndata;
for (size_t i = 0; i < ndata.size(); ++i) {
local->data[i] = ndata[i] + rank;
}
}
inline void TestBcast(size_t n, int root, int ntrial, int iter) {
int rank = rabit::GetRank();
std::string s; s.resize(n);
for (size_t i = 0; i < n; ++i) {
s[i] = char(i % 126 + 1);
}
std::string res;
if (root == rank) {
res = s;
rabit::Broadcast(&res, root);
} else {
rabit::Broadcast(&res, root);
}
utils::Check(res == s, "[%d] TestBcast fail", rank);
}
int main(int argc, char *argv[]) {
if (argc < 3) {
printf("Usage: <ndata>\n");
return 0;
}
int n = atoi(argv[1]);
rabit::Init(argc, argv);
int rank = rabit::GetRank();
int nproc = rabit::GetWorldSize();
std::string name = rabit::GetProcessorName();
Model model, local;
srand(0);
int ntrial = 0;
for (int i = 1; i < argc; ++i) {
int n;
if (sscanf(argv[i], "repeat=%d", &n) == 1) ntrial = n;
}
int iter = rabit::LoadCheckPoint(&model, &local);
if (iter == 0) {
model.InitModel(n, 1.0f);
local.InitModel(n, 1.0f + rank);
printf("[%d] reload-trail=%d, init iter=%d\n", rank, ntrial, iter);
} else {
printf("[%d] reload-trail=%d, init iter=%d\n", rank, ntrial, iter);
}
for (int r = iter; r < 3; ++r) {
TestMax(&model, &local, ntrial, r);
printf("[%d] !!!TestMax pass, iter=%d\n", rank, r);
int step = std::max(nproc / 3, 1);
for (int i = 0; i < nproc; i += step) {
TestBcast(n, i, ntrial, r);
}
printf("[%d] !!!TestBcast pass, iter=%d\n", rank, r);
TestSum(&model, &local, ntrial, r);
printf("[%d] !!!TestSum pass, iter=%d\n", rank, r);
rabit::CheckPoint(&model, &local);
printf("[%d] !!!CheckPont pass, iter=%d\n", rank, r);
}
rabit::Finalize();
return 0;
}

25
test/local_recover.py Executable file
View File

@@ -0,0 +1,25 @@
#!/usr/bin/python
import rabit
import numpy as np
rabit.init(lib='mock')
rank = rabit.get_rank()
n = 10
nround = 3
data = np.ones(n) * rank
version, model, local = rabit.load_checkpoint(True)
if version == 0:
model = np.zeros(n)
local = np.ones(n)
else:
print '[%d] restart from version %d' % (rank, version)
for i in xrange(version, nround):
res = rabit.allreduce(data + model+local, rabit.SUM)
print '[%d] iter=%d: %s' % (rank, i, str(res))
model = res
local[:] = i
rabit.checkpoint(model, local)
rabit.finalize()

127
test/model_recover.cc Normal file
View File

@@ -0,0 +1,127 @@
// this is a test case to test whether rabit can recover model when
// facing an exception
#include <rabit.h>
#include <rabit/utils.h>
#include <cstdio>
#include <cstdlib>
#include <cmath>
using namespace rabit;
// dummy model
class Model : public rabit::ISerializable {
public:
// iterations
std::vector<float> data;
// load from stream
virtual void Load(rabit::IStream &fi) {
fi.Read(&data);
}
/*! \brief save the model to the stream */
virtual void Save(rabit::IStream &fo) const {
fo.Write(data);
}
virtual void InitModel(size_t n) {
data.clear();
data.resize(n, 1.0f);
}
};
inline void TestMax(Model *model, int ntrial, int iter) {
int rank = rabit::GetRank();
int nproc = rabit::GetWorldSize();
const int z = iter + 111;
std::vector<float> ndata(model->data.size());
for (size_t i = 0; i < ndata.size(); ++i) {
ndata[i] = (i * (rank+1)) % z + model->data[i];
}
rabit::Allreduce<op::Max>(&ndata[0], ndata.size());
for (size_t i = 0; i < ndata.size(); ++i) {
float rmax = (i * 1) % z + model->data[i];
for (int r = 0; r < nproc; ++r) {
rmax = std::max(rmax, (float)((i * (r+1)) % z) + model->data[i]);
}
utils::Check(rmax == ndata[i], "[%d] TestMax check failurem i=%lu, rmax=%f, ndata=%f", rank, i, rmax, ndata[i]);
}
model->data = ndata;
}
inline void TestSum(Model *model, int ntrial, int iter) {
int rank = rabit::GetRank();
int nproc = rabit::GetWorldSize();
const int z = 131 + iter;
std::vector<float> ndata(model->data.size());
for (size_t i = 0; i < ndata.size(); ++i) {
ndata[i] = (i * (rank+1)) % z + model->data[i];
}
Allreduce<op::Sum>(&ndata[0], ndata.size());
for (size_t i = 0; i < ndata.size(); ++i) {
float rsum = model->data[i] * nproc;
for (int r = 0; r < nproc; ++r) {
rsum += (float)((i * (r+1)) % z);
}
utils::Check(fabsf(rsum - ndata[i]) < 1e-5 ,
"[%d] TestSum check failure, local=%g, allreduce=%g", rank, rsum, ndata[i]);
}
model->data = ndata;
}
inline void TestBcast(size_t n, int root, int ntrial, int iter) {
int rank = rabit::GetRank();
std::string s; s.resize(n);
for (size_t i = 0; i < n; ++i) {
s[i] = char(i % 126 + 1);
}
std::string res;
if (root == rank) {
res = s;
rabit::Broadcast(&res, root);
} else {
rabit::Broadcast(&res, root);
}
utils::Check(res == s, "[%d] TestBcast fail", rank);
}
int main(int argc, char *argv[]) {
if (argc < 3) {
printf("Usage: <ndata> <config>\n");
return 0;
}
int n = atoi(argv[1]);
rabit::Init(argc, argv);
int rank = rabit::GetRank();
int nproc = rabit::GetWorldSize();
std::string name = rabit::GetProcessorName();
Model model;
srand(0);
int ntrial = 0;
for (int i = 1; i < argc; ++i) {
int n;
if (sscanf(argv[i], "rabit_num_trial=%d", &n) == 1) ntrial = n;
}
int iter = rabit::LoadCheckPoint(&model);
if (iter == 0) {
model.InitModel(n);
printf("[%d] reload-trail=%d, init iter=%d\n", rank, ntrial, iter);
} else {
printf("[%d] reload-trail=%d, init iter=%d\n", rank, ntrial, iter);
}
for (int r = iter; r < 3; ++r) {
TestMax(&model, ntrial, r);
printf("[%d] !!!TestMax pass, iter=%d\n", rank, r);
int step = std::max(nproc / 3, 1);
for (int i = 0; i < nproc; i += step) {
TestBcast(n, i, ntrial, r);
}
printf("[%d] !!!TestBcast pass, iter=%d\n", rank, r);
TestSum(&model, ntrial, r);
printf("[%d] !!!TestSum pass, iter=%d\n", rank, r);
rabit::CheckPoint(&model);
printf("[%d] !!!CheckPont pass, iter=%d\n", rank, r);
}
rabit::Finalize();
return 0;
}

34
test/speed_runner.py Normal file
View File

@@ -0,0 +1,34 @@
import os
import argparse
import sys
def main():
parser = argparse.ArgumentParser(description='TODO')
parser.add_argument('-ho', '--host_dir', required=True)
parser.add_argument('-s', '--submit_script', required=True)
parser.add_argument('-rex', '--rabit_exec', required=True)
parser.add_argument('-mpi', '--mpi_exec', required=True)
args = parser.parse_args()
ndata = [10**4, 10**5, 10**6, 10**7]
nrepeat = [10**4, 10**3, 10**2, 10]
machines = [2,4,8,16,31]
executables = [args.rabit_exec, args.mpi_exec]
for executable in executables:
sys.stderr.write('Executable %s' % executable)
sys.stderr.flush()
for i, data in enumerate(ndata):
for machine in machines:
host_file = os.path.join(args.host_dir, 'hosts%d' % machine)
cmd = 'python %s %d %s %s %d %d' % (args.submit_script, machine, host_file, executable, data, nrepeat[i])
sys.stderr.write('data=%d, repeat=%d, machine=%d\n' % (data, nrepeat[i], machine))
sys.stderr.flush()
os.system(cmd)
sys.stderr.write('\n')
sys.stderr.flush()
if __name__ == "__main__":
main()

100
test/speed_test.cc Normal file
View File

@@ -0,0 +1,100 @@
// This program is used to test the speed of rabit API
#include <rabit.h>
#include <rabit/utils.h>
#include <rabit/timer.h>
#include <cstdio>
#include <cstdlib>
#include <cmath>
#include <time.h>
using namespace rabit;
double max_tdiff, sum_tdiff, bcast_tdiff, tot_tdiff;
inline void TestMax(size_t n) {
int rank = rabit::GetRank();
std::vector<float> ndata(n);
for (size_t i = 0; i < ndata.size(); ++i) {
ndata[i] = (i * (rank+1)) % 111;
}
double tstart = utils::GetTime();
rabit::Allreduce<op::Max>(&ndata[0], ndata.size());
max_tdiff += utils::GetTime() - tstart;
}
inline void TestSum(size_t n) {
int rank = rabit::GetRank();
const int z = 131;
std::vector<float> ndata(n);
for (size_t i = 0; i < ndata.size(); ++i) {
ndata[i] = (i * (rank+1)) % z;
}
double tstart = utils::GetTime();
rabit::Allreduce<op::Sum>(&ndata[0], ndata.size());
sum_tdiff += utils::GetTime() - tstart;
}
inline void TestBcast(size_t n, int root) {
int rank = rabit::GetRank();
std::string s; s.resize(n);
for (size_t i = 0; i < n; ++i) {
s[i] = char(i % 126 + 1);
}
std::string res;
res.resize(n);
if (root == rank) {
res = s;
}
double tstart = utils::GetTime();
rabit::Broadcast(&res[0], res.length(), root);
bcast_tdiff += utils::GetTime() - tstart;
}
inline void PrintStats(const char *name, double tdiff, int n, int nrep, size_t size) {
int nproc = rabit::GetWorldSize();
double tsum = tdiff;
rabit::Allreduce<op::Sum>(&tsum, 1);
double tavg = tsum / nproc;
double tsqr = tdiff - tavg;
tsqr *= tsqr;
rabit::Allreduce<op::Sum>(&tsqr, 1);
double tstd = sqrt(tsqr / nproc);
if (rabit::GetRank() == 0) {
rabit::TrackerPrintf("%s: mean=%g, std=%g sec\n", name, tavg, tstd);
double ndata = n;
ndata *= nrep * size;
if (n != 0) {
rabit::TrackerPrintf("%s-speed: %g MB/sec\n", name, (ndata / tavg) / 1024 / 1024 );
}
}
}
int main(int argc, char *argv[]) {
if (argc < 3) {
printf("Usage: <ndata> <nrepeat>\n");
return 0;
}
srand(0);
int n = atoi(argv[1]);
int nrep = atoi(argv[2]);
utils::Check(nrep >= 1, "need to at least repeat running once");
rabit::Init(argc, argv);
//int rank = rabit::GetRank();
int nproc = rabit::GetWorldSize();
std::string name = rabit::GetProcessorName();
max_tdiff = sum_tdiff = bcast_tdiff = 0;
double tstart = utils::GetTime();
for (int i = 0; i < nrep; ++i) {
TestMax(n);
TestSum(n);
TestBcast(n, rand() % nproc);
}
tot_tdiff = utils::GetTime() - tstart;
// use allreduce to get the sum and std of time
PrintStats("max_tdiff", max_tdiff, n, nrep, sizeof(float));
PrintStats("sum_tdiff", sum_tdiff, n, nrep, sizeof(float));
PrintStats("bcast_tdiff", bcast_tdiff, n, nrep, sizeof(char));
PrintStats("tot_tdiff", tot_tdiff, 0, nrep, sizeof(float));
rabit::Finalize();
return 0;
}

26
test/test.mk Normal file
View File

@@ -0,0 +1,26 @@
# this is a makefile used to show testcases of rabit
.PHONY: all
all:
# this experiment test recovery with actually process exit, use keepalive to keep program alive
model_recover_10_10k:
../tracker/rabit_demo.py -n 10 model_recover 10000 mock=0,0,1,0 mock=1,1,1,0
model_recover_10_10k_die_same:
../tracker/rabit_demo.py -n 10 model_recover 10000 mock=0,0,1,0 mock=1,1,1,0 mock=0,1,1,0 mock=4,1,1,0 mock=9,1,1,0
model_recover_10_10k_die_hard:
../tracker/rabit_demo.py -n 10 model_recover 10000 mock=0,0,1,0 mock=1,1,1,0 mock=1,1,1,1 mock=0,1,1,0 mock=4,1,1,0 mock=9,1,1,0 mock=8,1,2,0 mock=4,1,3,0
local_recover_10_10k:
../tracker/rabit_demo.py -n 10 local_recover 10000 mock=0,0,1,0 mock=1,1,1,0 mock=0,1,1,0 mock=4,1,1,0 mock=9,1,1,0 mock=1,1,1,1
pylocal_recover_10_10k:
../tracker/rabit_demo.py -n 10 ./local_recover.py 10000 mock=0,0,1,0 mock=1,1,1,0 mock=0,1,1,0 mock=4,1,1,0 mock=9,1,1,0 mock=1,1,1,1
lazy_recover_10_10k_die_hard:
../tracker/rabit_demo.py -n 10 lazy_recover 10000 mock=0,0,1,0 mock=1,1,1,0 mock=1,1,1,1 mock=0,1,1,0 mock=4,1,1,0 mock=9,1,1,0 mock=8,1,2,0 mock=4,1,3,0
lazy_recover_10_10k_die_same:
../tracker/rabit_demo.py -n 10 lazy_recover 10000 mock=0,0,1,0 mock=1,1,1,0 mock=0,1,1,0 mock=4,1,1,0 mock=9,1,1,0