[CI] Revise R tests. (#8430)

- Use the standard package check (check on the tarball instead of the source tree).
- Run commands in parallel.
- Cleanup dependencies installation.
- Replace makefile.
- Documentation.
- Test using the image from rhub.
This commit is contained in:
Jiaming Yuan
2022-11-09 09:12:13 +08:00
committed by GitHub
parent 4449e30184
commit a83748eb45
12 changed files with 499 additions and 363 deletions

View File

@@ -1,4 +1,4 @@
# Run R tests with noLD R. Only triggered by a pull request review
# Run expensive R tests with the help of rhub. Only triggered by a pull request review
# See discussion at https://github.com/dmlc/xgboost/pull/6378
name: XGBoost-R-noLD
@@ -7,9 +7,6 @@ on:
pull_request_review_comment:
types: [created]
env:
R_PACKAGES: c('XML', 'igraph', 'data.table', 'ggplot2', 'DiagrammeR', 'Ckmeans.1d.dp', 'vcd', 'testthat', 'lintr', 'knitr', 'rmarkdown', 'e1071', 'cplm', 'devtools', 'float', 'titanic')
permissions:
contents: read # to fetch code (actions/checkout)
@@ -18,26 +15,22 @@ jobs:
if: github.event.comment.body == '/gha run r-nold-test' && contains('OWNER,MEMBER,COLLABORATOR', github.event.comment.author_association)
timeout-minutes: 120
runs-on: ubuntu-latest
container: rhub/debian-gcc-devel-nold
container:
image: rhub/debian-gcc-devel-nold
steps:
- name: Install git and system packages
shell: bash
run: |
apt-get update && apt-get install -y git libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev libxml2-dev
apt update && apt install libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev libglpk-dev libxml2-dev libharfbuzz-dev libfribidi-dev git -y
- uses: actions/checkout@v2
with:
submodules: 'true'
- name: Install dependencies
shell: bash
shell: bash -l {0}
run: |
cat > install_libs.R <<EOT
install.packages(${{ env.R_PACKAGES }},
repos = 'http://cloud.r-project.org',
dependencies = c('Depends', 'Imports', 'LinkingTo'))
EOT
/tmp/R-devel/bin/Rscript install_libs.R
/tmp/R-devel/bin/Rscript -e "source('./R-package/tests/helper_scripts/install_deps.R')"
- name: Run R tests
shell: bash