[breaking] Save booster feature info in JSON, remove feature name generation. (#6605)
* Save feature info in booster in JSON model. * [breaking] Remove automatic feature name generation in `DMatrix`. This PR is to enable reliable feature validation in Python package.
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@@ -217,8 +217,8 @@ class TestModels:
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X = np.random.random((10, 3))
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y = np.random.randint(2, size=(10,))
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dm1 = xgb.DMatrix(X, y)
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dm2 = xgb.DMatrix(X, y, feature_names=("a", "b", "c"))
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dm1 = xgb.DMatrix(X, y, feature_names=("a", "b", "c"))
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dm2 = xgb.DMatrix(X, y)
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bst = xgb.train([], dm1)
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bst.predict(dm1) # success
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@@ -228,9 +228,6 @@ class TestModels:
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bst = xgb.train([], dm2)
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bst.predict(dm2) # success
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with pytest.raises(ValueError):
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bst.predict(dm1)
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bst.predict(dm2) # success
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def test_model_binary_io(self):
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model_path = 'test_model_binary_io.bin'
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@@ -458,3 +455,31 @@ class TestModels:
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merged = predt_0 + predt_1 - 0.5
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single = booster[1:7].predict(dtrain, output_margin=True)
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np.testing.assert_allclose(merged, single, atol=1e-6)
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@pytest.mark.skipif(**tm.no_pandas())
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def test_feature_info(self):
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import pandas as pd
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rows = 100
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cols = 10
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X = rng.randn(rows, cols)
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y = rng.randn(rows)
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feature_names = ["test_feature_" + str(i) for i in range(cols)]
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X_pd = pd.DataFrame(X, columns=feature_names)
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X_pd.iloc[:, 3] = X_pd.iloc[:, 3].astype(np.int)
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Xy = xgb.DMatrix(X_pd, y)
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assert Xy.feature_types[3] == "int"
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booster = xgb.train({}, dtrain=Xy, num_boost_round=1)
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assert booster.feature_names == Xy.feature_names
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assert booster.feature_names == feature_names
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assert booster.feature_types == Xy.feature_types
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with tempfile.TemporaryDirectory() as tmpdir:
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path = tmpdir + "model.json"
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booster.save_model(path)
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booster = xgb.Booster()
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booster.load_model(path)
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assert booster.feature_names == Xy.feature_names
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assert booster.feature_types == Xy.feature_types
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@@ -95,6 +95,11 @@ eval[test] = {data_path}
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}
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data = xgboost.DMatrix(data_path)
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booster = xgboost.train(parameters, data, num_boost_round=10)
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# CLI model doesn't contain feature info.
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booster.feature_names = None
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booster.feature_types = None
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booster.save_model(model_out_py)
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py_predt = booster.predict(data)
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@@ -180,7 +180,7 @@ class TestDMatrix:
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# reset
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dm.feature_names = None
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assert dm.feature_names == ['f0', 'f1', 'f2', 'f3', 'f4']
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assert dm.feature_names is None
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assert dm.feature_types is None
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def test_feature_names(self):
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