[CI] Remove R check from Jenkins (#6372)
* Remove R check from Jenkins * Print stacktrace when CRAN test fail in GitHub Actions * Add verbose flag in tests/ci_build/print_r_stacktrace.sh * Fix path in tests/ci_build/print_r_stacktrace.sh
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@@ -1,44 +0,0 @@
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FROM ubuntu:18.04
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ARG USE_R35=0
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# Environment
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ENV DEBIAN_FRONTEND noninteractive
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# Install all basic requirements
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RUN \
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apt-get update && \
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apt-get install -y software-properties-common tar unzip wget git build-essential doxygen graphviz libcurl4-openssl-dev libssl-dev libxml2-dev && \
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if [ $USE_R35 -eq 1 ]; then \
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apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && \
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add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/' && \
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apt-get update; \
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fi && \
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apt-get install -y r-base r-base-core r-recommended && \
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# CMake
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wget -nv -nc https://cmake.org/files/v3.13/cmake-3.13.0-Linux-x86_64.sh --no-check-certificate && \
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bash cmake-3.13.0-Linux-x86_64.sh --skip-license --prefix=/usr
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# Use 16 workers to compile R packages
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ENV MAKE 'make -j16'
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# Install R packages
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RUN Rscript -e "install.packages( \
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c('devtools', 'testthat', 'lintr', 'DiagrammeR', 'Ckmeans.1d.dp', 'vcd', 'data.table', 'stringi'), \
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repos = 'http://cloud.r-project.org', \
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dependencies = c('Depends', 'Imports', 'LinkingTo') \
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)"
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ENV GOSU_VERSION 1.10
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# Install lightweight sudo (not bound to TTY)
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RUN set -ex; \
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wget -O /usr/local/bin/gosu "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-amd64" && \
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chmod +x /usr/local/bin/gosu && \
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gosu nobody true
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# Default entry-point to use if running locally
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# It will preserve attributes of created files
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COPY entrypoint.sh /scripts/
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WORKDIR /workspace
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ENTRYPOINT ["/scripts/entrypoint.sh"]
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@@ -1,23 +0,0 @@
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#!/bin/bash
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set -e
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set -x
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make Rpack
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cd xgboost/
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# Run tests
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echo "Building with R CMD build"
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R CMD build --no-build-vignettes --no-manual .
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echo "Running R tests"
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R_PACKAGE_TARBALL=$(ls -1t *.tar.gz | head -n 1)
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export _R_CHECK_TIMINGS_=0
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export _R_CHECK_FORCE_SUGGESTS_=false
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R CMD check \
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${R_PACKAGE_TARBALL} \
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--no-vignettes \
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--no-manual \
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--as-cran \
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--install-args=--build
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@@ -3,17 +3,21 @@
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# To be called when R package tests have failed
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set -e
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set -x
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if [ -f "xgboost/xgboost.Rcheck/00install.out" ]; then
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echo "===== xgboost/xgboost.Rcheck/00install.out ===="
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cat xgboost/xgboost.Rcheck/00install.out
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flag="$1"
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if [ -f "xgboost.Rcheck/00install.out" ]; then
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echo "===== xgboost.Rcheck/00install.out ===="
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cat xgboost.Rcheck/00install.out
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fi
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if [ -f "xgboost/xgboost.Rcheck/00check.log" ]; then
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printf "\n\n===== xgboost/xgboost.Rcheck/00check.log ====\n"
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cat xgboost/xgboost.Rcheck/00check.log
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if [ -f "xgboost.Rcheck/00check.log" ]; then
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printf "\n\n===== xgboost.Rcheck/00check.log ====\n"
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cat xgboost.Rcheck/00check.log
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fi
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# Produce error code to interrupt Jenkins pipeline
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exit 1
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if [[ "$flag" == "fail" ]]
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then
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exit 1
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fi
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