Support v3 cuda array interface. (#6776)

This commit is contained in:
Jiaming Yuan 2021-03-25 09:58:09 +08:00 committed by GitHub
parent bcc0277338
commit 794fd6a46b
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
3 changed files with 98 additions and 14 deletions

View File

@ -0,0 +1,21 @@
/*!
* Copyright 2021 by Contributors
*/
#include "array_interface.h"
#include "../common/common.h"
namespace xgboost {
void ArrayInterfaceHandler::SyncCudaStream(int64_t stream) {
switch (stream) {
case 0:
LOG(FATAL) << "Invalid stream ID in array interface: " << stream;
case 1:
// default legacy stream
break;
case 2:
// default per-thread stream
default:
dh::safe_cuda(cudaStreamSynchronize(reinterpret_cast<cudaStream_t>(stream)));
}
}
} // namespace xgboost

View File

@ -18,6 +18,7 @@
#include "xgboost/logging.h" #include "xgboost/logging.h"
#include "xgboost/span.h" #include "xgboost/span.h"
#include "../common/bitfield.h" #include "../common/bitfield.h"
#include "../common/common.h"
namespace xgboost { namespace xgboost {
// Common errors in parsing columnar format. // Common errors in parsing columnar format.
@ -41,7 +42,7 @@ struct ArrayInterfaceErrors {
return str.c_str(); return str.c_str();
} }
static char const* Version() { static char const* Version() {
return "Only version 1 and 2 of `__cuda_array_interface__' are supported."; return "Only version <= 3 of `__cuda_array_interface__' are supported.";
} }
static char const* OfType(std::string const& type) { static char const* OfType(std::string const& type) {
static std::string str; static std::string str;
@ -119,9 +120,18 @@ class ArrayInterfaceHandler {
} }
static void Validate(std::map<std::string, Json> const& array) { static void Validate(std::map<std::string, Json> const& array) {
if (array.find("version") == array.cend()) { auto version_it = array.find("version");
if (version_it == array.cend()) {
LOG(FATAL) << "Missing `version' field for array interface"; LOG(FATAL) << "Missing `version' field for array interface";
} }
auto stream_it = array.find("stream");
if (stream_it != array.cend() && !IsA<Null>(stream_it->second)) {
// is cuda, check the version.
if (get<Integer const>(version_it->second) > 3) {
LOG(FATAL) << ArrayInterfaceErrors::Version();
}
}
if (array.find("typestr") == array.cend()) { if (array.find("typestr") == array.cend()) {
LOG(FATAL) << "Missing `typestr' field for array interface"; LOG(FATAL) << "Missing `typestr' field for array interface";
} }
@ -233,25 +243,31 @@ class ArrayInterfaceHandler {
} }
return p_data; return p_data;
} }
static void SyncCudaStream(int64_t stream);
}; };
#if !defined(XGBOOST_USE_CUDA)
inline void ArrayInterfaceHandler::SyncCudaStream(int64_t stream) {
common::AssertGPUSupport();
}
#endif // !defined(XGBOOST_USE_CUDA)
// A view over __array_interface__ // A view over __array_interface__
class ArrayInterface { class ArrayInterface {
void Initialize(std::map<std::string, Json> const &column, void Initialize(std::map<std::string, Json> const &array,
bool allow_mask = true) { bool allow_mask = true) {
ArrayInterfaceHandler::Validate(column); ArrayInterfaceHandler::Validate(array);
auto typestr = get<String const>(column.at("typestr")); auto typestr = get<String const>(array.at("typestr"));
this->AssignType(StringView{typestr}); this->AssignType(StringView{typestr});
auto shape = ArrayInterfaceHandler::ExtractShape(column); std::tie(num_rows, num_cols) = ArrayInterfaceHandler::ExtractShape(array);
num_rows = shape.first; data = ArrayInterfaceHandler::ExtractData(
num_cols = shape.second; array, StringView{typestr}, std::make_pair(num_rows, num_cols));
data = ArrayInterfaceHandler::ExtractData(column, StringView{typestr}, shape);
if (allow_mask) { if (allow_mask) {
common::Span<RBitField8::value_type> s_mask; common::Span<RBitField8::value_type> s_mask;
size_t n_bits = ArrayInterfaceHandler::ExtractMask(column, &s_mask); size_t n_bits = ArrayInterfaceHandler::ExtractMask(array, &s_mask);
valid = RBitField8(s_mask); valid = RBitField8(s_mask);
@ -261,12 +277,18 @@ class ArrayInterface {
<< "XGBoost doesn't support internal broadcasting."; << "XGBoost doesn't support internal broadcasting.";
} }
} else { } else {
CHECK(column.find("mask") == column.cend()) CHECK(array.find("mask") == array.cend())
<< "Masked array is not yet supported."; << "Masked array is not yet supported.";
} }
ArrayInterfaceHandler::ExtractStride(column, strides, num_rows, num_cols, ArrayInterfaceHandler::ExtractStride(array, strides, num_rows, num_cols,
typestr[2] - '0'); typestr[2] - '0');
auto stream_it = array.find("stream");
if (stream_it != array.cend() && !IsA<Null>(stream_it->second)) {
int64_t stream = get<Integer const>(stream_it->second);
ArrayInterfaceHandler::SyncCudaStream(stream);
}
} }
public: public:
@ -377,7 +399,6 @@ class ArrayInterface {
bst_feature_t num_cols; bst_feature_t num_cols;
size_t strides[2]{0, 0}; size_t strides[2]{0, 0};
void* data; void* data;
Type type; Type type;
}; };

View File

@ -0,0 +1,42 @@
/*!
* Copyright 2021 by Contributors
*/
#include <gtest/gtest.h>
#include <xgboost/host_device_vector.h>
#include "../helpers.h"
#include "../../../src/data/array_interface.h"
namespace xgboost {
__global__ void SleepForTest(uint64_t *out, uint64_t duration) {
auto start = clock64();
auto t = 0;
while (t < duration) {
t = clock64() - start;
}
out[0] = t;
}
TEST(ArrayInterface, Stream) {
size_t constexpr kRows = 10, kCols = 10;
HostDeviceVector<float> storage;
auto arr_str = RandomDataGenerator{kRows, kCols, 0}.GenerateArrayInterface(&storage);
cudaStream_t stream;
cudaStreamCreate(&stream);
auto j_arr =Json::Load(StringView{arr_str});
j_arr["stream"] = Integer(reinterpret_cast<int64_t>(stream));
Json::Dump(j_arr, &arr_str);
dh::caching_device_vector<uint64_t> out(1, 0);
uint64_t dur = 1e9;
dh::LaunchKernel{1, 1, 0, stream}(SleepForTest, out.data().get(), dur);
ArrayInterface arr(arr_str);
auto t = out[0];
CHECK_GE(t, dur);
cudaStreamDestroy(stream);
}
} // namespace xgboost