Run training with empty DMatrix. (#4990)

This makes GPU Hist robust in distributed environment as some workers might not
be associated with any data in either training or evaluation.

* Disable rabit mock test for now: See #5012 .

* Disable dask-cudf test at prediction for now: See #5003

* Launch dask job for all workers despite they might not have any data.
* Check 0 rows in elementwise evaluation metrics.

   Using AUC and AUC-PR still throws an error.  See #4663 for a robust fix.

* Add tests for edge cases.
* Add `LaunchKernel` wrapper handling zero sized grid.
* Move some parts of allreducer into a cu file.
* Don't validate feature names when the booster is empty.

* Sync number of columns in DMatrix.

  As num_feature is required to be the same across all workers in data split
  mode.

* Filtering in dask interface now by default syncs all booster that's not
empty, instead of using rank 0.

* Fix Jenkins' GPU tests.

* Install dask-cuda from source in Jenkins' test.

  Now all tests are actually running.

* Restore GPU Hist tree synchronization test.

* Check UUID of running devices.

  The check is only performed on CUDA version >= 10.x, as 9.x doesn't have UUID field.

* Fix CMake policy and project variables.

  Use xgboost_SOURCE_DIR uniformly, add policy for CMake >= 3.13.

* Fix copying data to CPU

* Fix race condition in cpu predictor.

* Fix duplicated DMatrix construction.

* Don't download extra nccl in CI script.
This commit is contained in:
Jiaming Yuan
2019-11-06 16:13:13 +08:00
committed by GitHub
parent 807a244517
commit 7663de956c
44 changed files with 603 additions and 272 deletions

View File

@@ -252,8 +252,10 @@ class GPUSketcher {
});
} else if (n_cuts_cur_[icol] > 0) {
// if more elements than cuts: use binary search on cumulative weights
int block = 256;
FindCutsK<<<common::DivRoundUp(n_cuts_cur_[icol], block), block>>>(
uint32_t constexpr kBlockThreads = 256;
uint32_t const kGrids = common::DivRoundUp(n_cuts_cur_[icol], kBlockThreads);
dh::LaunchKernel {kGrids, kBlockThreads} (
FindCutsK,
cuts_d_.data().get() + icol * n_cuts_,
fvalues_cur_.data().get(),
weights2_.data().get(),
@@ -403,7 +405,8 @@ class GPUSketcher {
// NOTE: This will typically support ~ 4M features - 64K*64
dim3 grid3(common::DivRoundUp(batch_nrows, block3.x),
common::DivRoundUp(num_cols_, block3.y), 1);
UnpackFeaturesK<<<grid3, block3>>>(
dh::LaunchKernel {grid3, block3} (
UnpackFeaturesK,
fvalues_.data().get(),
has_weights_ ? feature_weights_.data().get() : nullptr,
row_ptrs_.data().get() + batch_row_begin,