[pyspark] fix empty data issue when constructing DMatrix (#8245)
Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
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@@ -17,6 +17,7 @@ from pyspark.ml.evaluation import (
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BinaryClassificationEvaluator,
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MulticlassClassificationEvaluator,
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)
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from pyspark.ml.feature import VectorAssembler
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from pyspark.ml.functions import vector_to_array
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from pyspark.ml.linalg import Vectors
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from pyspark.ml.tuning import CrossValidator, ParamGridBuilder
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@@ -1058,3 +1059,65 @@ class XgboostLocalTest(SparkTestCase):
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for row in pred_result:
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assert np.isclose(row.prediction, row.expected_prediction, rtol=1e-3)
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def test_empty_validation_data(self):
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df_train = self.session.createDataFrame(
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[
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(Vectors.dense(10.1, 11.2, 11.3), 0, False),
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(Vectors.dense(1, 1.2, 1.3), 1, False),
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(Vectors.dense(14.0, 15.0, 16.0), 0, False),
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(Vectors.dense(1.1, 1.2, 1.3), 1, True),
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],
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["features", "label", "val_col"],
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)
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classifier = SparkXGBClassifier(
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num_workers=2,
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min_child_weight=0.0,
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reg_alpha=0,
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reg_lambda=0,
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validation_indicator_col="val_col",
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)
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model = classifier.fit(df_train)
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pred_result = model.transform(df_train).collect()
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for row in pred_result:
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self.assertEqual(row.prediction, row.label)
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def test_empty_train_data(self):
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df_train = self.session.createDataFrame(
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[
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(Vectors.dense(10.1, 11.2, 11.3), 0, True),
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(Vectors.dense(1, 1.2, 1.3), 1, True),
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(Vectors.dense(14.0, 15.0, 16.0), 0, True),
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(Vectors.dense(1.1, 1.2, 1.3), 1, False),
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],
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["features", "label", "val_col"],
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)
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classifier = SparkXGBClassifier(
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num_workers=2,
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min_child_weight=0.0,
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reg_alpha=0,
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reg_lambda=0,
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validation_indicator_col="val_col",
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)
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model = classifier.fit(df_train)
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pred_result = model.transform(df_train).collect()
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for row in pred_result:
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self.assertEqual(row.prediction, 1.0)
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def test_empty_partition(self):
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# raw_df.repartition(4) will result int severe data skew, actually,
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# there is no any data in reducer partition 1, reducer partition 2
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# see https://github.com/dmlc/xgboost/issues/8221
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raw_df = self.session.range(0, 100, 1, 50).withColumn(
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"label", spark_sql_func.when(spark_sql_func.rand(1) > 0.5, 1).otherwise(0)
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)
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vector_assembler = (
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VectorAssembler().setInputCols(["id"]).setOutputCol("features")
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)
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data_trans = vector_assembler.setHandleInvalid("keep").transform(raw_df)
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data_trans.show(100)
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classifier = SparkXGBClassifier(
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num_workers=4,
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)
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classifier.fit(data_trans)
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