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basis to plot

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El Potaeto 2015-01-04 17:23:53 +01:00
parent 8b45ef07ca
commit 33bb168574
1 changed files with 33 additions and 10 deletions
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43
R-package/R/xgb.plot.tree.R
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@ -5,20 +5,43 @@ require(magrittr)
text <- readLines('xgb.model.dump') %>% str_trim(side = "both") text <- readLines('xgb.model.dump') %>% str_trim(side = "both")
position <- str_match(text, "booster") %>% is.na %>% not %>% which %>% c(length(text)+1) position <- str_match(text, "booster") %>% is.na %>% not %>% which %>% c(length(text)+1)
extract <- function(x, pattern) str_extract(x, pattern) %>% str_split("=") %>% lapply(function(x) x[2]) %>% unlist %>% as.numeric extract <- function(x, pattern) str_extract(x, pattern) %>% str_split("=") %>% lapply(function(x) x[2] %>% as.numeric) %>% unlist
#for(i in 1:(length(position)-1)){ #for(i in 1:(length(position)-1)){
i=1 i=1
cat(paste("\n",i,"\n")) cat(paste("\n",i,"\n"))
tree <- text[(position[i]+1):(position[i+1]-1)] tree <- text[(position[i]+1):(position[i+1]-1)]
paste(tree, collapse = "\n") %>% cat paste(tree, collapse = "\n") %>% cat
branch <- str_match(tree, "leaf") %>% is.na %>% tree[.] notLeaf <- str_match(tree, "leaf") %>% is.na
id <- str_extract(branch, "\\d*:") %>% str_replace(":", "") %>% as.numeric leaf <- notLeaf %>% not %>% tree[.]
feature <- str_extract(branch, "\\[.*\\]") branch <- notLeaf %>% tree[.]
yes <- extract(branch, "yes=\\d*") idBranch <- str_extract(branch, "\\d*:") %>% str_replace(":", "") %>% as.numeric
no <- extract(branch, "no=\\d*") idLeaf <- str_extract(leaf, "\\d*:") %>% str_replace(":", "") %>% as.numeric
missing <- extract(branch, "missing=\\d+") featureBranch <- str_extract(branch, "f\\d*<") %>% str_replace("<", "") #%>% as.numeric
gain <- extract(branch, "gain=\\d*\\.*\\d*") featureLeaf <- rep("Leaf", length(leaf))
cover <- extract(branch, "cover=\\d*\\.*\\d*") yesBranch <- extract(branch, "yes=\\d*")
dt <- data.table(ID = id, Feature = feature, Yes = yes, No = no, Missing = missing, Gain = gain, Cover = cover) yesLeaf <- rep(NA, length(leaf))
noBranch <- extract(branch, "no=\\d*")
noLeaf <- rep(NA, length(leaf))
missingBranch <- extract(branch, "missing=\\d+")
missingLeaf <- rep(NA, length(leaf))
qualityBranch <- extract(branch, "gain=\\d*\\.*\\d*")
qualityLeaf <- extract(leaf, "leaf=\\-*\\d*\\.*\\d*")
coverBranch <- extract(branch, "cover=\\d*\\.*\\d*")
coverLeaf <- extract(leaf, "cover=\\d*\\.*\\d*")
dt <- data.table(ID = c(idBranch, idLeaf), Feature = c(featureBranch, featureLeaf), Yes = c(yesBranch, yesLeaf), No = c(noBranch, noLeaf), Missing = c(missingBranch, missingLeaf), Quality = c(qualityBranch, qualityLeaf), Cover = c(coverBranch, coverLeaf))[order(ID)][,Tree:=i]
set(dt, j = "YesFeature", value = ifelse(is.na(dt[,Yes]),NA,dt[ID == dt[,Yes], ID]))
set(dt, j = "NoFeature", value = ifelse(is.na(dt[,No]),NA,dt[ID == dt[,No], ID]))
dtBranch <- dt[Feature!="Leaf"]
yesPath <- paste(dtBranch[,ID], "-->", dtBranch[,Yes], sep = "")
noPath <- paste(dtBranch[,ID], "-->", dtBranch[,No], sep = "")
missingPath <- paste(dtBranch[,ID], "-->|Missing|", dtBranch[,Missing], sep = "")
yesPathStyle <- paste("style ", dtBranch[,Yes], " fill:#A2EB86, stroke:#04C4AB, stroke-width:2px", sep = "")
noPathStyle <- paste("style ", dtBranch[,No], " fill:#FFA070, stroke:#FF5E5E, stroke-width:2px", sep = "")
path <- c(yesPath, noPath, yesPathStyle, noPathStyle) %>% .[order(.)] %>% paste(sep = "", collapse = ";") %>% paste("graph LR", .,collapse = "",sep = ";")
DiagrammeR(path, height = 400)
#} #}