Send default configuration from metric to objective. (#8760)

This commit is contained in:
Jiaming Yuan
2023-02-09 20:18:07 +08:00
committed by GitHub
parent 5f76edd296
commit 199c421d60
4 changed files with 62 additions and 7 deletions

View File

@@ -1,5 +1,6 @@
import json
import os
from typing import Optional, Tuple
import numpy as np
import pytest
@@ -10,16 +11,56 @@ from xgboost import testing as tm
dpath = tm.data_dir(__file__)
def test_aft_survival_toy_data():
# See demo/aft_survival/aft_survival_viz_demo.py
@pytest.fixture(scope="module")
def toy_data() -> Tuple[xgb.DMatrix, np.ndarray, np.ndarray]:
X = np.array([1, 2, 3, 4, 5]).reshape((-1, 1))
INF = np.inf
y_lower = np.array([ 10, 15, -INF, 30, 100])
y_upper = np.array([INF, INF, 20, 50, INF])
y_lower = np.array([10, 15, -INF, 30, 100])
y_upper = np.array([INF, INF, 20, 50, INF])
dmat = xgb.DMatrix(X)
dmat.set_float_info('label_lower_bound', y_lower)
dmat.set_float_info('label_upper_bound', y_upper)
dmat.set_float_info("label_lower_bound", y_lower)
dmat.set_float_info("label_upper_bound", y_upper)
return dmat, y_lower, y_upper
def test_default_metric(toy_data: Tuple[xgb.DMatrix, np.ndarray, np.ndarray]) -> None:
Xy, y_lower, y_upper = toy_data
def run(evals: Optional[list]) -> None:
# test with or without actual evaluation.
booster = xgb.train(
{"objective": "survival:aft", "aft_loss_distribution": "extreme"},
Xy,
num_boost_round=1,
evals=evals,
)
config = json.loads(booster.save_config())
metrics = config["learner"]["metrics"]
assert len(metrics) == 1
assert metrics[0]["aft_loss_param"]["aft_loss_distribution"] == "extreme"
booster = xgb.train(
{"objective": "survival:aft"},
Xy,
num_boost_round=1,
evals=evals,
)
config = json.loads(booster.save_config())
metrics = config["learner"]["metrics"]
assert len(metrics) == 1
assert metrics[0]["aft_loss_param"]["aft_loss_distribution"] == "normal"
run([(Xy, "Train")])
run(None)
def test_aft_survival_toy_data(
toy_data: Tuple[xgb.DMatrix, np.ndarray, np.ndarray]
) -> None:
# See demo/aft_survival/aft_survival_viz_demo.py
X = np.array([1, 2, 3, 4, 5]).reshape((-1, 1))
dmat, y_lower, y_upper = toy_data
# "Accuracy" = the number of data points whose ranged label (y_lower, y_upper) includes
# the corresponding predicted label (y_pred)