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make xgcombine buffer work

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This commit is contained in:
tqchen
2014-08-17 22:49:36 -07:00
parent 4ed4b08146
commit 0d9a8c042c
5 changed files with 205 additions and 207 deletions
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Makefile
+3 -3
View File
@@ -1,6 +1,6 @@
export CC = clang
export CXX = clang++
export CFLAGS = -Wall -O3 -msse2 -Wno-unknown-pragmas
export CC = gcc
export CXX = g++
export CFLAGS = -Wall -O3 -msse2 -Wno-unknown-pragmas -fopenmp
# specify tensor path
BIN = xgboost
python/xgboost_wrapper.cpp
+1 -1
View File
@@ -140,7 +140,7 @@ extern "C"{
for (size_t i = 0; i < len; ++i) {
const int ridx = idxset[i];
SparseBatch::Inst inst = batch[ridx];
utils::Check(ridx < batch.size, "slice index exceed number of rows");
utils::Check(static_cast<size_t>(ridx) < batch.size, "slice index exceed number of rows");
ret.row_data_.resize(ret.row_data_.size() + inst.length);
memcpy(&ret.row_data_[ret.row_ptr_.back()], inst.data,
sizeof(SparseBatch::Entry) * inst.length);
src/learner/objective-inl.hpp
+1 -1
View File
@@ -171,7 +171,7 @@ class SoftmaxMultiClassObj : public IObjFunction {
rec[k] = preds[j * nclass + k];
}
Softmax(&rec);
unsigned label = static_cast<unsigned>(info.labels[j]);
int label = static_cast<int>(info.labels[j]);
utils::Check(label < nclass, "SoftmaxMultiClassObj: label exceed num_class");
const float wt = info.GetWeight(j);
for (int k = 0; k < nclass; ++k) {
tools/Makefile
-1
View File
@@ -12,7 +12,6 @@ export LDFLAGS= -pthread -lm
xgcombine_buffer : xgcombine_buffer.cpp
$(BIN) :
$(CXX) $(CFLAGS) $(LDFLAGS) -o $@ $(filter %.cpp %.o %.c, $^)
tools/xgcombine_buffer.cpp
+37 -38
View File
@@ -10,12 +10,11 @@
#include <cstring>
#include <ctime>
#include <cmath>
#include "../regrank/xgboost_regrank_data.h"
#include "../utils/xgboost_utils.h"
#include "../src/io/simple_dmatrix-inl.hpp"
#include "../src/utils/utils.h"
using namespace xgboost;
using namespace xgboost::booster;
using namespace xgboost::regrank;
using namespace xgboost::io;
// header in dataset
struct Header{
@@ -69,59 +68,58 @@ inline int readnum( std::vector<Header> &vec ){
inline void vskip( std::vector<Header> &vec ){
for( size_t i = 0; i < vec.size(); i ++ ){
if( !vec[i].is_dense ){
utils::Assert( fscanf( vec[i].fi, "%*d%*[^\n]\n" ) >= 0 );
utils::Assert( fscanf( vec[i].fi, "%*d%*[^\n]\n" ) >= 0, "sparse" );
}else{
utils::Assert( fscanf( vec[i].fi, "%*f\n" ) >= 0 );
utils::Assert( fscanf( vec[i].fi, "%*f\n" ) >= 0, "dense" );
}
}
}
class DataLoader: public DMatrix{
public:
class DataLoader: public DMatrixSimple {
public:
// whether to do node and edge feature renormalization
int rescale;
int linelimit;
public:
public:
FILE *fp, *fwlist, *fgroup, *fweight;
std::vector<Header> fheader;
std::vector<FMatrixS::REntry> entry;
DataLoader( void ){
rescale = 0;
linelimit = -1;
fp = NULL; fwlist = NULL; fgroup = NULL; fweight = NULL;
}
private:
inline void Load( std::vector<unsigned> &findex, std::vector<float> &fvalue, std::vector<Header> &vec ){
unsigned fidx; float fv;
private:
inline void Load( std::vector<SparseBatch::Entry> &feats, std::vector<Header> &vec ){
SparseBatch::Entry e;
for( size_t i = 0; i < vec.size(); i ++ ){
if( !vec[i].is_dense ) {
for( int j = 0; j < vec[i].tmp_num; j ++ ){
utils::Assert( fscanf ( vec[i].fi, "%u:%f", &fidx, &fv ) == 2, "Error when load feat" );
vec[i].CheckBase( fidx );
fidx += vec[i].base;
findex.push_back( fidx ); fvalue.push_back( fv );
utils::Assert( fscanf ( vec[i].fi, "%u:%f", &e.findex, &e.fvalue ) == 2, "Error when load feat" );
vec[i].CheckBase( e.findex );
e.findex += vec[i].base;
feats.push_back(e);
}
}else{
utils::Assert( fscanf ( vec[i].fi, "%f", &fv ) == 1, "load feat" );
fidx = vec[i].base;
findex.push_back( fidx ); fvalue.push_back( fv );
utils::Assert( fscanf ( vec[i].fi, "%f", &e.fvalue ) == 1, "load feat" );
e.findex = vec[i].base;
feats.push_back(e);
}
}
}
inline void DoRescale( std::vector<float> &vec ){
inline void DoRescale( std::vector<SparseBatch::Entry> &vec ){
double sum = 0.0;
for( size_t i = 0; i < vec.size(); i ++ ){
sum += vec[i] * vec[i];
sum += vec[i].fvalue * vec[i].fvalue;
}
sum = sqrt( sum );
for( size_t i = 0; i < vec.size(); i ++ ){
vec[i] /= sum;
vec[i].fvalue /= sum;
}
}
public:
public:
// basically we are loading all the data inside
inline void Load( void ){
this->data.Clear();
this->Clear();
float label, weight = 0.0f;
unsigned ngleft = 0, ngacc = 0;
@@ -132,39 +130,40 @@ public:
while( fscanf( fp, "%f", &label ) == 1 ){
if( ngleft == 0 && fgroup != NULL ){
utils::Assert( fscanf( fgroup, "%u", &ngleft ) == 1 );
utils::Assert( fscanf( fgroup, "%u", &ngleft ) == 1, "group" );
}
if( fweight != NULL ){
utils::Assert( fscanf( fweight, "%f", &weight ) == 1 );
utils::Assert( fscanf( fweight, "%f", &weight ) == 1, "weight" );
}
ngleft -= 1; ngacc += 1;
int pass = 1;
if( fwlist != NULL ){
utils::Assert( fscanf( fwlist, "%u", &pass ) ==1 );
utils::Assert( fscanf( fwlist, "%u", &pass ) ==1, "pass" );
}
if( pass == 0 ){
vskip( fheader ); ngacc -= 1;
}else{
const int nfeat = readnum( fheader );
std::vector<unsigned> findex;
std::vector<float> fvalue;
std::vector<SparseBatch::Entry> feats;
// pairs
this->Load( findex, fvalue, fheader );
utils::Assert( findex.size() == (unsigned)nfeat );
if( rescale != 0 ) this->DoRescale( fvalue );
this->Load( feats, fheader );
utils::Assert( feats.size() == (unsigned)nfeat, "nfeat" );
if( rescale != 0 ) this->DoRescale( feats );
// push back data :)
this->info.labels.push_back( label );
// push back weight if any
if( fweight != NULL ){
this->info.weights.push_back( weight );
}
this->data.AddRow( findex, fvalue );
this->AddRow( feats );
}
if( ngleft == 0 && fgroup != NULL && ngacc != 0 ){
info.group_ptr.push_back( info.group_ptr.back() + ngacc );
utils::Assert( info.group_ptr.back() == data.NumRow(), "group size must match num rows" );
utils::Assert( info.group_ptr.back() == info.num_row, "group size must match num rows" );
ngacc = 0;
}
// linelimit
@@ -174,17 +173,17 @@ public:
}
if( ngleft == 0 && fgroup != NULL && ngacc != 0 ){
info.group_ptr.push_back( info.group_ptr.back() + ngacc );
utils::Assert( info.group_ptr.back() == data.NumRow(), "group size must match num rows" );
utils::Assert( info.group_ptr.back() == info.num_row, "group size must match num rows" );
}
this->data.InitData();
}
};
const char *folder = "features";
int main( int argc, char *argv[] ){
if( argc < 3 ){
printf("Usage:xgcombine_buffer <inname> <outname> [options] -f [features] -fd [densefeatures]\n"\
printf("Usage:xgcombine_buffer <inname> <outname> [options] -f [features] -fd [densefeatures]\n" \
"options: -rescale -linelimit -fgroup <groupfilename> -wlist <whitelistinstance>\n");
return 0;
}