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[R] Robust endian detection in CRAN xgboost build (#5232)

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* [R] Robust endian detection in CRAN xgboost build

* Check for external backtrace() lib

* Update Makevars.win
This commit is contained in:
Philip Hyunsu Cho 2020-01-27 02:55:13 -08:00 committed by GitHub
parent 1b3947d929
commit 0c7455276d
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GPG Key ID: 4AEE18F83AFDEB23
4 changed files with 1060 additions and 5 deletions
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7
Makefile
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@ -252,10 +252,15 @@ Rpack: clean_all
cp -r dmlc-core/include xgboost/src/dmlc-core/include cp -r dmlc-core/include xgboost/src/dmlc-core/include
cp -r dmlc-core/src xgboost/src/dmlc-core/src cp -r dmlc-core/src xgboost/src/dmlc-core/src
cp ./LICENSE xgboost cp ./LICENSE xgboost
cat R-package/src/Makevars.in|sed '2s/.*/PKGROOT=./' | sed '3s/.*/ENABLE_STD_THREAD=0/' > xgboost/src/Makevars.in # Modify PKGROOT in Makevars.in
cat R-package/src/Makevars.in|sed '2s/.*/PKGROOT=./' > xgboost/src/Makevars.in
# Configure Makevars.win (Windows-specific Makevars, likely using MinGW)
cp xgboost/src/Makevars.in xgboost/src/Makevars.win cp xgboost/src/Makevars.in xgboost/src/Makevars.win
cat xgboost/src/Makevars.in| sed '3s/.*/ENABLE_STD_THREAD=0/' > xgboost/src/Makevars.win
sed -i -e 's/@OPENMP_CXXFLAGS@/$$\(SHLIB_OPENMP_CXXFLAGS\)/g' xgboost/src/Makevars.win sed -i -e 's/@OPENMP_CXXFLAGS@/$$\(SHLIB_OPENMP_CXXFLAGS\)/g' xgboost/src/Makevars.win
sed -i -e 's/-pthread/$$\(SHLIB_PTHREAD_FLAGS\)/g' xgboost/src/Makevars.win sed -i -e 's/-pthread/$$\(SHLIB_PTHREAD_FLAGS\)/g' xgboost/src/Makevars.win
sed -i -e 's/@ENDIAN_FLAG@/-DDMLC_CMAKE_LITTLE_ENDIAN=1/g' xgboost/src/Makevars.win
sed -i -e 's/@BACKTRACE_LIB@//g' xgboost/src/Makevars.win
bash R-package/remove_warning_suppression_pragma.sh bash R-package/remove_warning_suppression_pragma.sh
rm xgboost/remove_warning_suppression_pragma.sh rm xgboost/remove_warning_suppression_pragma.sh

1040
R-package/configure vendored
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14
R-package/configure.ac
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@ -4,6 +4,18 @@ AC_PREREQ(2.62)
AC_INIT([xgboost],[0.6-3],[],[xgboost],[]) AC_INIT([xgboost],[0.6-3],[],[xgboost],[])
### Check whether backtrace() is part of libc or the external lib libexecinfo
AC_MSG_CHECKING([Backtrace lib])
AC_MSG_RESULT([])
AC_CHECK_LIB([execinfo], [backtrace], [BACKTRACE_LIB=-lexecinfo], [BACKTRACE_LIB=''])
### Endian detection
AC_MSG_CHECKING([endian])
AC_MSG_RESULT([])
AC_RUN_IFELSE([AC_LANG_PROGRAM([[#include <stdint.h>]], [[const uint16_t endianness = 256; return !!(*(const uint8_t *)&endianness);]])],
[ENDIAN_FLAG="-DDMLC_CMAKE_LITTLE_ENDIAN=1"],
[ENDIAN_FLAG="-DDMLC_CMAKE_LITTLE_ENDIAN=0"])
OPENMP_CXXFLAGS="" OPENMP_CXXFLAGS=""
if test `uname -s` = "Linux" if test `uname -s` = "Linux"
@ -26,6 +38,8 @@ then
fi fi
AC_SUBST(OPENMP_CXXFLAGS) AC_SUBST(OPENMP_CXXFLAGS)
AC_SUBST(ENDIAN_FLAG)
AC_SUBST(BACKTRACE_LIB)
AC_CONFIG_FILES([src/Makevars]) AC_CONFIG_FILES([src/Makevars])
AC_OUTPUT AC_OUTPUT

4
R-package/src/Makevars.in
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@ -17,8 +17,8 @@ endif
$(foreach v, $(XGB_RFLAGS), $(warning $(v))) $(foreach v, $(XGB_RFLAGS), $(warning $(v)))
PKG_CPPFLAGS= -I$(PKGROOT)/include -I$(PKGROOT)/dmlc-core/include -I$(PKGROOT)/rabit/include -I$(PKGROOT) $(XGB_RFLAGS) PKG_CPPFLAGS= -I$(PKGROOT)/include -I$(PKGROOT)/dmlc-core/include -I$(PKGROOT)/rabit/include -I$(PKGROOT) $(XGB_RFLAGS)
PKG_CXXFLAGS= @OPENMP_CXXFLAGS@ -pthread PKG_CXXFLAGS= @OPENMP_CXXFLAGS@ @ENDIAN_FLAG@ -pthread
PKG_LIBS = @OPENMP_CXXFLAGS@ -pthread PKG_LIBS = @OPENMP_CXXFLAGS@ @ENDIAN_FLAG@ @BACKTRACE_LIB@ -pthread
OBJECTS= ./xgboost_R.o ./xgboost_custom.o ./xgboost_assert.o ./init.o\ OBJECTS= ./xgboost_R.o ./xgboost_custom.o ./xgboost_assert.o ./init.o\
$(PKGROOT)/amalgamation/xgboost-all0.o $(PKGROOT)/amalgamation/dmlc-minimum0.o\ $(PKGROOT)/amalgamation/xgboost-all0.o $(PKGROOT)/amalgamation/dmlc-minimum0.o\
$(PKGROOT)/rabit/src/engine_empty.o $(PKGROOT)/rabit/src/c_api.o $(PKGROOT)/rabit/src/engine_empty.o $(PKGROOT)/rabit/src/c_api.o