From d174a79fbdba0a1ba8b0d829033ad249ac30dfd6 Mon Sep 17 00:00:00 2001
From: hetong <hetong007@gmail.com>
Date: Sat, 6 Sep 2014 21:54:12 -0700
Subject: [PATCH 1/2] add doc for agaricus.test

---
 R-package/R/xgboost.R             |  6 +++---
 R-package/man/agaricus.train.Rd   |  4 +---
 R-package/man/xgb.DMatrix.save.Rd |  2 +-
 R-package/man/xgboost.Rd          | 10 +++++++---
 4 files changed, 12 insertions(+), 10 deletions(-)

diff --git a/R-package/R/xgboost.R b/R-package/R/xgboost.R
index bf8cd96a6..9426c0b26 100644
--- a/R-package/R/xgboost.R
+++ b/R-package/R/xgboost.R
@@ -69,10 +69,10 @@ xgboost <- function(data = NULL, label = NULL, params = list(), nrounds,
 #' 
 #' \itemize{
 #'  \item \code{label} the label for each record
-#'  \item \code{data} a sparse Matrix of \code{dgCMatrix} class, with 127 rows.
+#'  \item \code{data} a sparse Matrix of \code{dgCMatrix} class, with 127 columns.
 #' }
 #'
-#'#' @references
+#' @references
 #' https://archive.ics.uci.edu/ml/datasets/Mushroom
 #' 
 #' Bache, K. & Lichman, M. (2013). UCI Machine Learning Repository 
@@ -96,7 +96,7 @@ NULL
 #' 
 #' \itemize{
 #'  \item \code{label} the label for each record
-#'  \item \code{data} a sparse Matrix of \code{dgCMatrix} class, with 127 rows.
+#'  \item \code{data} a sparse Matrix of \code{dgCMatrix} class, with 127 columns.
 #' }
 #'
 #' @references
diff --git a/R-package/man/agaricus.train.Rd b/R-package/man/agaricus.train.Rd
index d1a401ecd..dd9f6e9a3 100644
--- a/R-package/man/agaricus.train.Rd
+++ b/R-package/man/agaricus.train.Rd
@@ -17,10 +17,8 @@ This data set includes the following fields:
 
 \itemize{
  \item \code{label} the label for each record
- \item \code{data} a sparse Matrix of \code{dgCMatrix} class, with 127 rows.
+ \item \code{data} a sparse Matrix of \code{dgCMatrix} class, with 127 columns.
 }
-
-#'
 }
 \references{
 https://archive.ics.uci.edu/ml/datasets/Mushroom
diff --git a/R-package/man/xgb.DMatrix.save.Rd b/R-package/man/xgb.DMatrix.save.Rd
index 2692069dc..139db8548 100644
--- a/R-package/man/xgb.DMatrix.save.Rd
+++ b/R-package/man/xgb.DMatrix.save.Rd
@@ -6,7 +6,7 @@
 xgb.DMatrix.save(DMatrix, fname)
 }
 \arguments{
-\item{DMatrix}{the model object.}
+\item{DMatrix}{the DMatrix object}
 
 \item{fname}{the name of the binary file.}
 }
diff --git a/R-package/man/xgboost.Rd b/R-package/man/xgboost.Rd
index 435423d28..95c3374fc 100644
--- a/R-package/man/xgboost.Rd
+++ b/R-package/man/xgboost.Rd
@@ -45,8 +45,12 @@ Parallelization is automatically enabled if OpenMP is present.
 Number of threads can also be manually specified via "nthread" parameter
 }
 \examples{
-data(iris)
-bst <- xgboost(as.matrix(iris[,1:4]),as.numeric(iris[,5]=='setosa'), nrounds = 2)
-pred <- predict(bst, as.matrix(iris[,1:4]))
+data(agaricus.train, package='xgboost')
+data(agaricus.test, package='xgboost')
+train <- agaricus.train
+test <- agaricus.test
+bst <- xgboost(data = train$data, label = train$label, max.depth = 2,
+               eta = 1, nround = 2,objective = "binary:logistic")
+pred <- predict(bst, test$data)
 }
 

From ddf715953a69c13b22d1cf736444dfb12198b7a7 Mon Sep 17 00:00:00 2001
From: hetong <hetong007@gmail.com>
Date: Sat, 6 Sep 2014 22:03:07 -0700
Subject: [PATCH 2/2] forced add doc for test

---
 R-package/man/agaricus.test.Rd | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)
 create mode 100644 R-package/man/agaricus.test.Rd

diff --git a/R-package/man/agaricus.test.Rd b/R-package/man/agaricus.test.Rd
new file mode 100644
index 000000000..3cf87c9f8
--- /dev/null
+++ b/R-package/man/agaricus.test.Rd
@@ -0,0 +1,31 @@
+% Generated by roxygen2 (4.0.1): do not edit by hand
+\docType{data}
+\name{agaricus.test}
+\alias{agaricus.test}
+\title{Test part from Mushroom Data Set}
+\format{A list containing a label vector, and a dgCMatrix object with 1611
+rows and 127 variables}
+\usage{
+data(agaricus.test)
+}
+\description{
+This data set is originally from the Mushroom data set,
+UCI Machine Learning Repository.
+}
+\details{
+This data set includes the following fields:
+
+\itemize{
+ \item \code{label} the label for each record
+ \item \code{data} a sparse Matrix of \code{dgCMatrix} class, with 127 columns.
+}
+}
+\references{
+https://archive.ics.uci.edu/ml/datasets/Mushroom
+
+Bache, K. & Lichman, M. (2013). UCI Machine Learning Repository
+[http://archive.ics.uci.edu/ml]. Irvine, CA: University of California,
+School of Information and Computer Science.
+}
+\keyword{datasets}
+